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Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack

Earthworms are important soil macrofauna inhabiting almost all ecosystems. Their biomass is large and their burrowing and ingestion of soils alters soil physicochemical properties. Because of their large biomass, earthworms are regarded as an indicator of “soil heath”. However, primarily because the...

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Autores principales: Kodama, Naomi, Kimura, Toshifumi, Yonemura, Seiichiro, Kaneda, Satoshi, Ohashi, Mizue, Ikeno, Hidetoshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4041649/
https://www.ncbi.nlm.nih.gov/pubmed/24886977
http://dx.doi.org/10.1371/journal.pone.0097986
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author Kodama, Naomi
Kimura, Toshifumi
Yonemura, Seiichiro
Kaneda, Satoshi
Ohashi, Mizue
Ikeno, Hidetoshi
author_facet Kodama, Naomi
Kimura, Toshifumi
Yonemura, Seiichiro
Kaneda, Satoshi
Ohashi, Mizue
Ikeno, Hidetoshi
author_sort Kodama, Naomi
collection PubMed
description Earthworms are important soil macrofauna inhabiting almost all ecosystems. Their biomass is large and their burrowing and ingestion of soils alters soil physicochemical properties. Because of their large biomass, earthworms are regarded as an indicator of “soil heath”. However, primarily because the difficulties in quantifying their behavior, the extent of their impact on soil material flow dynamics and soil health is poorly understood. Image data, with the aid of image processing tools, are a powerful tool in quantifying the movements of objects. Image data sets are often very large and time-consuming to analyze, especially when continuously recorded and manually processed. We aimed to develop a system to quantify earthworm movement from video recordings. Our newly developed program successfully tracked the two-dimensional positions of three separate parts of the earthworm and simultaneously output the change in its body length. From the output data, we calculated the velocity of the earthworm's movement. Our program processed the image data three times faster than the manual tracking system. To date, there are no existing systems to quantify earthworm activity from continuously recorded image data. The system developed in this study will reduce input time by a factor of three compared with manual data entry and will reduce errors involved in quantifying large data sets. Furthermore, it will provide more reliable measured values, although the program is still a prototype that needs further testing and improvement. Combined with other techniques, such as measuring metabolic gas emissions from earthworm bodies, this program could provide continuous observations of earthworm behavior in response to environmental variables under laboratory conditions. In the future, this standardized method will be applied to other animals, and the quantified earthworm movement will be incorporated into models of soil material flow dynamics or behavior in response to chemical substances present in the soil.
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spelling pubmed-40416492014-06-09 Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack Kodama, Naomi Kimura, Toshifumi Yonemura, Seiichiro Kaneda, Satoshi Ohashi, Mizue Ikeno, Hidetoshi PLoS One Research Article Earthworms are important soil macrofauna inhabiting almost all ecosystems. Their biomass is large and their burrowing and ingestion of soils alters soil physicochemical properties. Because of their large biomass, earthworms are regarded as an indicator of “soil heath”. However, primarily because the difficulties in quantifying their behavior, the extent of their impact on soil material flow dynamics and soil health is poorly understood. Image data, with the aid of image processing tools, are a powerful tool in quantifying the movements of objects. Image data sets are often very large and time-consuming to analyze, especially when continuously recorded and manually processed. We aimed to develop a system to quantify earthworm movement from video recordings. Our newly developed program successfully tracked the two-dimensional positions of three separate parts of the earthworm and simultaneously output the change in its body length. From the output data, we calculated the velocity of the earthworm's movement. Our program processed the image data three times faster than the manual tracking system. To date, there are no existing systems to quantify earthworm activity from continuously recorded image data. The system developed in this study will reduce input time by a factor of three compared with manual data entry and will reduce errors involved in quantifying large data sets. Furthermore, it will provide more reliable measured values, although the program is still a prototype that needs further testing and improvement. Combined with other techniques, such as measuring metabolic gas emissions from earthworm bodies, this program could provide continuous observations of earthworm behavior in response to environmental variables under laboratory conditions. In the future, this standardized method will be applied to other animals, and the quantified earthworm movement will be incorporated into models of soil material flow dynamics or behavior in response to chemical substances present in the soil. Public Library of Science 2014-06-02 /pmc/articles/PMC4041649/ /pubmed/24886977 http://dx.doi.org/10.1371/journal.pone.0097986 Text en © 2014 Kodama et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Kodama, Naomi
Kimura, Toshifumi
Yonemura, Seiichiro
Kaneda, Satoshi
Ohashi, Mizue
Ikeno, Hidetoshi
Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack
title Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack
title_full Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack
title_fullStr Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack
title_full_unstemmed Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack
title_short Automated Analysis of Two-Dimensional Positions and Body Lengths of Earthworms (Oligochaeta); MimizuTrack
title_sort automated analysis of two-dimensional positions and body lengths of earthworms (oligochaeta); mimizutrack
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4041649/
https://www.ncbi.nlm.nih.gov/pubmed/24886977
http://dx.doi.org/10.1371/journal.pone.0097986
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