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Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes

Plant species, including algae and fungi, are based on type specimens to which the name of a taxon is permanently attached. Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morph...

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Autores principales: Hughey, Jeffery R., Gabrielson, Paul W., Rohmer, Laurence, Tortolani, Jacquie, Silva, Mayra, Miller, Kathy Ann, Young, Joel D., Martell, Craig, Ruediger, Erik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044621/
https://www.ncbi.nlm.nih.gov/pubmed/24894641
http://dx.doi.org/10.1038/srep05113
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author Hughey, Jeffery R.
Gabrielson, Paul W.
Rohmer, Laurence
Tortolani, Jacquie
Silva, Mayra
Miller, Kathy Ann
Young, Joel D.
Martell, Craig
Ruediger, Erik
author_facet Hughey, Jeffery R.
Gabrielson, Paul W.
Rohmer, Laurence
Tortolani, Jacquie
Silva, Mayra
Miller, Kathy Ann
Young, Joel D.
Martell, Craig
Ruediger, Erik
author_sort Hughey, Jeffery R.
collection PubMed
description Plant species, including algae and fungi, are based on type specimens to which the name of a taxon is permanently attached. Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morpho-anatomical characters, but recently systematists are using DNA sequence data. These studies are flawed if the DNA is isolated from misidentified modern specimens. We propose a genome-based solution. Using 4 × 4 mm(2) of material from type specimens, we assembled 14 plastid and 15 mitochondrial genomes attributed to the red algae Pyropia perforata, Py. fucicola, and Py. kanakaensis. The chloroplast genomes were fairly conserved, but the mitochondrial genomes differed significantly among populations in content and length. Complete genomes are attainable from 19(th) and early 20(th) century type specimens; this validates the effort and cost of their curation as well as supports the practice of the type method.
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spelling pubmed-40446212014-06-12 Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes Hughey, Jeffery R. Gabrielson, Paul W. Rohmer, Laurence Tortolani, Jacquie Silva, Mayra Miller, Kathy Ann Young, Joel D. Martell, Craig Ruediger, Erik Sci Rep Article Plant species, including algae and fungi, are based on type specimens to which the name of a taxon is permanently attached. Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morpho-anatomical characters, but recently systematists are using DNA sequence data. These studies are flawed if the DNA is isolated from misidentified modern specimens. We propose a genome-based solution. Using 4 × 4 mm(2) of material from type specimens, we assembled 14 plastid and 15 mitochondrial genomes attributed to the red algae Pyropia perforata, Py. fucicola, and Py. kanakaensis. The chloroplast genomes were fairly conserved, but the mitochondrial genomes differed significantly among populations in content and length. Complete genomes are attainable from 19(th) and early 20(th) century type specimens; this validates the effort and cost of their curation as well as supports the practice of the type method. Nature Publishing Group 2014-06-04 /pmc/articles/PMC4044621/ /pubmed/24894641 http://dx.doi.org/10.1038/srep05113 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. The images in this article are included in the article's Creative Commons license, unless indicated otherwise in the image credit; if the image is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the image. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/
spellingShingle Article
Hughey, Jeffery R.
Gabrielson, Paul W.
Rohmer, Laurence
Tortolani, Jacquie
Silva, Mayra
Miller, Kathy Ann
Young, Joel D.
Martell, Craig
Ruediger, Erik
Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
title Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
title_full Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
title_fullStr Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
title_full_unstemmed Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
title_short Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
title_sort minimally destructive sampling of type specimens of pyropia (bangiales, rhodophyta) recovers complete plastid and mitochondrial genomes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044621/
https://www.ncbi.nlm.nih.gov/pubmed/24894641
http://dx.doi.org/10.1038/srep05113
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