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Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis

The metabolism of gluconate is well characterized in prokaryotes where it is known to be degraded following phosphorylation by gluconokinase. Less is known of gluconate metabolism in humans. Human gluconokinase activity was recently identified proposing questions about the metabolic role of gluconat...

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Autores principales: Rohatgi, Neha, Nielsen, Tine Kragh, Bjørn, Sara Petersen, Axelsson, Ivar, Paglia, Giuseppe, Voldborg, Bjørn Gunnar, Palsson, Bernhard O., Rolfsson, Óttar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4045858/
https://www.ncbi.nlm.nih.gov/pubmed/24896608
http://dx.doi.org/10.1371/journal.pone.0098760
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author Rohatgi, Neha
Nielsen, Tine Kragh
Bjørn, Sara Petersen
Axelsson, Ivar
Paglia, Giuseppe
Voldborg, Bjørn Gunnar
Palsson, Bernhard O.
Rolfsson, Óttar
author_facet Rohatgi, Neha
Nielsen, Tine Kragh
Bjørn, Sara Petersen
Axelsson, Ivar
Paglia, Giuseppe
Voldborg, Bjørn Gunnar
Palsson, Bernhard O.
Rolfsson, Óttar
author_sort Rohatgi, Neha
collection PubMed
description The metabolism of gluconate is well characterized in prokaryotes where it is known to be degraded following phosphorylation by gluconokinase. Less is known of gluconate metabolism in humans. Human gluconokinase activity was recently identified proposing questions about the metabolic role of gluconate in humans. Here we report the recombinant expression, purification and biochemical characterization of isoform I of human gluconokinase alongside substrate specificity and kinetic assays of the enzyme catalyzed reaction. The enzyme, shown to be a dimer, had ATP dependent phosphorylation activity and strict specificity towards gluconate out of 122 substrates tested. In order to evaluate the metabolic impact of gluconate in humans we modeled gluconate metabolism using steady state metabolic network analysis. The results indicate that significant metabolic flux changes in anabolic pathways linked to the hexose monophosphate shunt (HMS) are induced through a small increase in gluconate concentration. We argue that the enzyme takes part in a context specific carbon flux route into the HMS that, in humans, remains incompletely explored. Apart from the biochemical description of human gluconokinase, the results highlight that little is known of the mechanism of gluconate metabolism in humans despite its widespread use in medicine and consumer products.
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spelling pubmed-40458582014-06-09 Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis Rohatgi, Neha Nielsen, Tine Kragh Bjørn, Sara Petersen Axelsson, Ivar Paglia, Giuseppe Voldborg, Bjørn Gunnar Palsson, Bernhard O. Rolfsson, Óttar PLoS One Research Article The metabolism of gluconate is well characterized in prokaryotes where it is known to be degraded following phosphorylation by gluconokinase. Less is known of gluconate metabolism in humans. Human gluconokinase activity was recently identified proposing questions about the metabolic role of gluconate in humans. Here we report the recombinant expression, purification and biochemical characterization of isoform I of human gluconokinase alongside substrate specificity and kinetic assays of the enzyme catalyzed reaction. The enzyme, shown to be a dimer, had ATP dependent phosphorylation activity and strict specificity towards gluconate out of 122 substrates tested. In order to evaluate the metabolic impact of gluconate in humans we modeled gluconate metabolism using steady state metabolic network analysis. The results indicate that significant metabolic flux changes in anabolic pathways linked to the hexose monophosphate shunt (HMS) are induced through a small increase in gluconate concentration. We argue that the enzyme takes part in a context specific carbon flux route into the HMS that, in humans, remains incompletely explored. Apart from the biochemical description of human gluconokinase, the results highlight that little is known of the mechanism of gluconate metabolism in humans despite its widespread use in medicine and consumer products. Public Library of Science 2014-06-04 /pmc/articles/PMC4045858/ /pubmed/24896608 http://dx.doi.org/10.1371/journal.pone.0098760 Text en © 2014 Rohatgi et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Rohatgi, Neha
Nielsen, Tine Kragh
Bjørn, Sara Petersen
Axelsson, Ivar
Paglia, Giuseppe
Voldborg, Bjørn Gunnar
Palsson, Bernhard O.
Rolfsson, Óttar
Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis
title Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis
title_full Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis
title_fullStr Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis
title_full_unstemmed Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis
title_short Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis
title_sort biochemical characterization of human gluconokinase and the proposed metabolic impact of gluconic acid as determined by constraint based metabolic network analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4045858/
https://www.ncbi.nlm.nih.gov/pubmed/24896608
http://dx.doi.org/10.1371/journal.pone.0098760
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