MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or function...

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Detalles Bibliográficos
Autores principales: Treangen, Todd J, Koren, Sergey, Sommer, Daniel D, Liu, Bo, Astrovskaya, Irina, Ondov, Brian, Darling, Aaron E, Phillippy, Adam M, Pop, Mihai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4053804/
https://www.ncbi.nlm.nih.gov/pubmed/23320958
http://dx.doi.org/10.1186/gb-2013-14-1-r2
Descripción
Sumario:We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost. MetAMOS can be downloaded from: https://github.com/treangen/MetAMOS.

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