Cargando…

Separating homeologs by phasing in the tetraploid wheat transcriptome

BACKGROUND: The high level of identity among duplicated homoeologous genomes in tetraploid pasta wheat presents substantial challenges for de novo transcriptome assembly. To solve this problem, we develop a specialized bioinformatics workflow that optimizes transcriptome assembly and separation of m...

Descripción completa

Detalles Bibliográficos
Autores principales:	Krasileva, Ksenia V, Buffalo, Vince, Bailey, Paul, Pearce, Stephen, Ayling, Sarah, Tabbita, Facundo, Soria, Marcelo, Wang, Shichen, Akhunov, Eduard, Uauy, Cristobal, Dubcovsky, Jorge
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4053977/ https://www.ncbi.nlm.nih.gov/pubmed/23800085 http://dx.doi.org/10.1186/gb-2013-14-6-r66

Ejemplares similares

Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat
por: Ranwez, Vincent, et al.
Publicado: (2013)

Transcriptional signatures of wheat inflorescence development
por: VanGessel, Carl, et al.
Publicado: (2022)

A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat
por: Uauy, Cristobal, et al.
Publicado: (2009)

Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence
por: Cantu, Dario, et al.
Publicado: (2011)

Regulation of Zn and Fe transporters by the GPC1 gene during early wheat monocarpic senescence
por: Pearce, Stephen, et al.
Publicado: (2014)

Uncovering homeologous relationships between tetraploid Agropyron cristatum and bread wheat genomes using COS markers
por: Said, Mahmoud, et al.
Publicado: (2019)

A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains
por: Simmonds, James, et al.
Publicado: (2016)

Evolution of Homeologous Gene Expression in Polyploid Wheat
por: Zhao, Na, et al.
Publicado: (2020)

Sequence-Based Mapping of the Polyploid Wheat Genome
por: Saintenac, Cyrille, et al.
Publicado: (2013)

Illegitimate Recombination Between Homeologous Genes in Wheat Genome
por: Liu, Chao, et al.
Publicado: (2020)

Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes
por: Garbus, Ingrid, et al.
Publicado: (2015)

Dissection of Cell Death Induction by Wheat Stem Rust Resistance Protein Sr35 and Its Matching Effector AvrSr35
por: Bolus, Stephen, et al.
Publicado: (2019)

A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization
por: Alabdullah, Abdul Kader, et al.
Publicado: (2019)

Gene editing and mutagenesis reveal inter-cultivar differences and additivity in the contribution of TaGW2 homoeologues to grain size and weight in wheat
por: Wang, Wei, et al.
Publicado: (2018)

Dynamic Evolution of α-Gliadin Prolamin Gene Family in Homeologous Genomes of Hexaploid Wheat
por: Huo, Naxin, et al.
Publicado: (2018)

A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat
por: Sun, Jianqiang, et al.
Publicado: (2023)

Variation in the AvrSr35 gene determines Sr35 resistance against wheat stem rust race Ug99
por: Salcedo, Andres, et al.
Publicado: (2017)

Genetic dissection of the roles of β-hydroxylases in carotenoid metabolism, photosynthesis, and plant growth in tetraploid wheat (Triticum turgidum L.)
por: Bekkering, Cody S., et al.
Publicado: (2023)

Multiregional origins of the domesticated tetraploid wheats
por: Oliveira, Hugo R., et al.
Publicado: (2020)

Identification and characterization of Sr13, a tetraploid wheat gene that confers resistance to the Ug99 stem rust race group
por: Zhang, Wenjun, et al.
Publicado: (2017)

Expression partitioning of homeologs and tandem duplications contribute to salt tolerance in wheat (Triticum aestivum L.)
por: Zhang, Yumei, et al.
Publicado: (2016)

Proton‐pumping pyrophosphatase homeolog expression is a dynamic trait in bread wheat ( Triticum aestivum )
por: Menadue, Daniel Jamie, et al.
Publicado: (2021)

Homeolog expression quantification methods for allopolyploids
por: Kuo, Tony C Y, et al.
Publicado: (2018)

The genetic architecture of genome‐wide recombination rate variation in allopolyploid wheat revealed by nested association mapping
por: Jordan, Katherine W., et al.
Publicado: (2018)

Identification and validation of QTL for grain yield and plant water status under contrasting water treatments in fall-sown spring wheats
por: Zhang, Junli, et al.
Publicado: (2018)

Mutant combinations of lycopene ɛ‐cyclase and β‐carotene hydroxylase 2 homoeologs increased β‐carotene accumulation in endosperm of tetraploid wheat (Triticum turgidum L.) grains
por: Yu, Shu, et al.
Publicado: (2021)

Identification and characterization of a natural polymorphism in FT-A2 associated with increased number of grains per spike in wheat
por: Glenn, Priscilla, et al.
Publicado: (2021)

Genetic Variability for Grain Components Related to Nutritional Quality in Spelt and Common Wheat
por: Huertas-García, Ana Belén, et al.
Publicado: (2023)

SNP Discovery for mapping alien introgressions in wheat
por: Tiwari, Vijay K, et al.
Publicado: (2014)

Gene Duplication and Evolution Dynamics in the Homeologous Regions Harboring Multiple Prolamin and Resistance Gene Families in Hexaploid Wheat
por: Huo, Naxin, et al.
Publicado: (2018)

Genome size variation in diploid and tetraploid wild wheats
por: Özkan, Hakan, et al.
Publicado: (2010)

A reductionist approach to dissecting grain weight and yield in wheat
por: Brinton, Jemima, et al.
Publicado: (2019)

Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses
por: Rutter, William B., et al.
Publicado: (2017)

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay
por: Akhunov, Eduard, et al.
Publicado: (2009)

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors
por: Cantu, Dario, et al.
Publicado: (2013)

Genetic and Morpho-Agronomic Characterization of Sicilian Tetraploid Wheat Germplasm
por: Sicilia, Angelo, et al.
Publicado: (2022)

Homoeolog-specific transcriptional bias in allopolyploid wheat
por: Akhunova, Alina R, et al.
Publicado: (2010)

Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)
por: Liu, Zhenshan, et al.
Publicado: (2015)

Genomic homeology between Pennisetum purpureum and Pennisetum glaucum (Poaceae)
por: dos Reis, Gabriela Barreto, et al.
Publicado: (2014)

A likelihood ratio test for changes in homeolog expression bias
por: Smith, Ronald D., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_dd1stuon76sktkjaa26r0kel8g