Cargando…

MOABS: model based analysis of bisulfite sequencing data

Bisulfite sequencing (BS-seq) is the gold standard for studying genome-wide DNA methylation. We developed MOABS to increase the speed, accuracy, statistical power and biological relevance of BS-seq data analysis. MOABS detects differential methylation with 10-fold coverage at single-CpG resolution b...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sun, Deqiang, Xi, Yuanxin, Rodriguez, Benjamin, Park, Hyun Jung, Tong, Pan, Meong, Mira, Goodell, Margaret A, Li, Wei
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Method
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054608/ https://www.ncbi.nlm.nih.gov/pubmed/24565500 http://dx.doi.org/10.1186/gb-2014-15-2-r38

Ejemplares similares

Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
por: Miura, Fumihito, et al.
Publicado: (2012)

Whole-genome bisulfite sequencing with improved accuracy and cost
por: Suzuki, Masako, et al.
Publicado: (2018)

metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
por: Jühling, Frank, et al.
Publicado: (2016)

BSMAP: whole genome bisulfite sequence MAPping program
por: Xi, Yuanxin, et al.
Publicado: (2009)

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
por: Hansen, Kasper D, et al.
Publicado: (2012)

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation
por: Lim, Jing-Quan, et al.
Publicado: (2012)

A polymerase engineered for bisulfite sequencing
por: Millar, Doug, et al.
Publicado: (2015)

Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
por: Liu, Yaping, et al.
Publicado: (2012)

In-solution hybrid capture of bisulfite-converted DNA for targeted bisulfite sequencing of 174 ADME genes
por: Ivanov, Maxim, et al.
Publicado: (2013)

epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data
por: Vincent, Martin, et al.
Publicado: (2017)

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
por: Adey, Andrew, et al.
Publicado: (2012)

RNA cytosine methylation analysis by bisulfite sequencing
por: Schaefer, Matthias, et al.
Publicado: (2009)

Partial bisulfite conversion for unique template sequencing
por: Kumar, Vijay, et al.
Publicado: (2018)

GBSA: a comprehensive software for analysing whole genome bisulfite sequencing data
por: Benoukraf, Touati, et al.
Publicado: (2013)

Analyzing whole genome bisulfite sequencing data from highly divergent genotypes
por: Wulfridge, Phillip, et al.
Publicado: (2019)

Use of MoAb D612 in combination with a panel of MoAb for the immunocytochemical identification of metastases from colon-rectum carcinoma.
por: Mottolese, M., et al.
Publicado: (1990)

Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing
por: Lee, Eun-Joon, et al.
Publicado: (2011)

Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates
por: Wu, Hao, et al.
Publicado: (2015)

Determining subpopulation methylation profiles from bisulfite sequencing data of heterogeneous samples using DXM
por: Fong, Jerry, et al.
Publicado: (2021)

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling
por: Boyle, Patrick, et al.
Publicado: (2012)

Highly efficient single-stranded DNA ligation technique improves low-input whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
por: Miura, Fumihito, et al.
Publicado: (2019)

Systematic evaluation of parameters in RNA bisulfite sequencing data generation and analysis
por: Johnson, Zachary, et al.
Publicado: (2022)

Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing
por: Kunde-Ramamoorthy, Govindarajan, et al.
Publicado: (2014)

Statistically robust methylation calling for whole-transcriptome bisulfite sequencing reveals distinct methylation patterns for mouse RNAs
por: Legrand, Carine, et al.
Publicado: (2017)

Bisulfite sequencing Data Presentation and Compilation (BDPC) web server—a useful tool for DNA methylation analysis
por: Rohde, Christian, et al.
Publicado: (2008)

MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data
por: Barturen, Guillermo, et al.
Publicado: (2014)

Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing
por: Giehr, Pascal, et al.
Publicado: (2018)

CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data
por: Su, Jianzhong, et al.
Publicado: (2013)

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
por: Brinkman, Arie B., et al.
Publicado: (2012)

Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR
por: Chen, Yunshun, et al.
Publicado: (2018)

Method of targeted bisulfite massive parallel sequencing of the human LINE-1 retrotransposon promoter
por: Vasilyev, Stanislav A., et al.
Publicado: (2021)

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
por: Statham, Aaron L., et al.
Publicado: (2012)

Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
por: Guo, Hongshan, et al.
Publicado: (2013)

Investigating bisulfite short-read mapping failure with hairpin bisulfite sequencing data
por: Porter, Jacob, et al.
Publicado: (2015)

DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing
por: Chen, Kaifu, et al.
Publicado: (2013)

Single-cell, locus-specific bisulfite sequencing (SLBS) for direct detection of epimutations in DNA methylation patterns
por: Gravina, Silvia, et al.
Publicado: (2015)

Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells
por: Han, Lin, et al.
Publicado: (2017)

Rapid quantification of DNA methylation through dNMP analysis following bisulfite-PCR
por: Yang, Inchul, et al.
Publicado: (2006)

MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects
por: Pardo, Carolina E., et al.
Publicado: (2011)

Draft Genome Sequence of Microvirga sp. Strain BSC39, Isolated from Biological Soil Crust of Moab, Utah
por: Bailey, Alexis C., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_07sshgftitut8q7s6au8hv73md