Cargando…

Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference

Gene regulatory networks are a crucial aspect of systems biology in describing molecular mechanisms of the cell. Various computational models rely on random gene selection to infer such networks from microarray data. While incorporation of prior knowledge into data analysis has been deemed important...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Guocai, Cairelli, Michael J., Kilicoglu, Halil, Shin, Dongwook, Rindflesch, Thomas C.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4055569/ https://www.ncbi.nlm.nih.gov/pubmed/24921649 http://dx.doi.org/10.1371/journal.pcbi.1003666

Ejemplares similares

Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs
por: Zhang, Rui, et al.
Publicado: (2014)

Sortal anaphora resolution to enhance relation extraction from biomedical literature
por: Kilicoglu, Halil, et al.
Publicado: (2016)

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing
por: Rindflesch, Thomas C., et al.
Publicado: (2018)

Assigning factuality values to semantic relations extracted from biomedical research literature
por: Kilicoglu, Halil, et al.
Publicado: (2017)

Data Integration for Microarrays: Enhanced Inference for Gene Regulatory Networks
por: Sîrbu, Alina, et al.
Publicado: (2015)

Constructing a semantic predication gold standard from the biomedical literature
por: Kilicoglu, Halil, et al.
Publicado: (2011)

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease
por: Masseroli, Marco, et al.
Publicado: (2006)

Cross-Platform Microarray Data Normalisation for Regulatory Network Inference
por: Sîrbu, Alina, et al.
Publicado: (2010)

Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury
por: Cairelli, Michael J, et al.
Publicado: (2015)

Inferring gene regulatory networks from asynchronous microarray data with AIRnet
por: Oviatt, David, et al.
Publicado: (2010)

On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference
por: Cosgrove, Elissa J, et al.
Publicado: (2010)

Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks
por: Li, Yong, et al.
Publicado: (2010)

Quantitative inference of dynamic regulatory pathways via microarray data
por: Chang, Wen-Chieh, et al.
Publicado: (2005)

Mining Biomedical Literature to Explore Interactions between Cancer Drugs and Dietary Supplements
por: Zhang, Rui, et al.
Publicado: (2015)

Broad-coverage biomedical relation extraction with SemRep
por: Kilicoglu, Halil, et al.
Publicado: (2020)

Clustering cliques for graph-based summarization of the biomedical research literature
por: Zhang, Han, et al.
Publicado: (2013)

ARACNe-based inference, using curated microarray data, of Arabidopsis thaliana root transcriptional regulatory networks
por: Chávez Montes, Ricardo A, et al.
Publicado: (2014)

Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks
por: Greenfield, Alex, et al.
Publicado: (2013)

Consistency of biological networks inferred from microarray and sequencing data
por: Vinciotti, Veronica, et al.
Publicado: (2016)

Using empirical biological knowledge to infer regulatory networks from multi-omics data
por: Pačínková, Anna, et al.
Publicado: (2022)

Correction: Using empirical biological knowledge to infer regulatory networks from multi-omics data
por: Pačínková, Anna, et al.
Publicado: (2022)

MapReduce Algorithms for Inferring Gene Regulatory Networks from Time-Series Microarray Data Using an Information-Theoretic Approach
por: Abduallah, Yasser, et al.
Publicado: (2017)

Knowledge of the perturbation design is essential for accurate gene regulatory network inference
por: Seçilmiş, Deniz, et al.
Publicado: (2022)

A comparative analytical assay of gene regulatory networks inferred using microarray and RNA-seq datasets
por: Izadi, Fereshteh, et al.
Publicado: (2016)

Enhancing gene regulatory network inference through data integration with markov random fields
por: Banf, Michael, et al.
Publicado: (2017)

Versatile knowledge guided network inference method for prioritizing key regulatory factors in multi-omics data
por: Ogris, Christoph, et al.
Publicado: (2021)

Inference of regulatory networks through temporally sparse data
por: Alali, Mohammad, et al.
Publicado: (2022)

Ensemble Inference and Inferability of Gene Regulatory Networks
por: Ud-Dean, S. M. Minhaz, et al.
Publicado: (2014)

TMA Navigator: network inference, patient stratification and survival analysis with tissue microarray data
por: Lubbock, Alexander L. R., et al.
Publicado: (2013)

Multi-omics regulatory network inference in the presence of missing data
por: Henao, Juan D, et al.
Publicado: (2023)

Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis
por: Chouvardas, Panagiotis, et al.
Publicado: (2016)

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
por: Bravo González-Blas, Carmen, et al.
Publicado: (2023)

Microarray Data Processing Techniques for Genome-Scale Network Inference from Large Public Repositories
por: Chockalingam, Sriram, et al.
Publicado: (2016)

A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data
por: Thomas, Reuben, et al.
Publicado: (2007)

Enhancing Offensive Language Detection with Data Augmentation and Knowledge Distillation
por: Deng, Jiawen, et al.
Publicado: (2023)

Inferring the experimental design for accurate gene regulatory network inference
por: Seçilmiş, Deniz, et al.
Publicado: (2021)

β-empirical Bayes inference and model diagnosis of microarray data
por: Hossain Mollah, Mohammad Manir, et al.
Publicado: (2012)

Classification of Microarray Data Using Kernel Fuzzy Inference System
por: Kumar, Mukesh, et al.
Publicado: (2014)

Tools for statistical inference: observed data and data augmentation methods
por: Tanner, Martin A
Publicado: (1991)

Inferring microRNA and transcription factor regulatory networks in heterogeneous data
por: Le, Thuc D, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_gernubr10rqsh4h64gopr2pkd4