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Diffusion-controlled reaction rates for two active sites on a sphere

BACKGROUND: The diffusion-limited reaction rate of a uniform spherical reactant is generalized to anisotropic reactivity. Previous work has shown that the protein model of a uniform sphere is unsatisfactory in many cases. Competition of ligands binding to two active sites, on a spherical enzyme or c...

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Autor principal: Shoup, David E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058695/
https://www.ncbi.nlm.nih.gov/pubmed/24982756
http://dx.doi.org/10.1186/2046-1682-7-3
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author Shoup, David E
author_facet Shoup, David E
author_sort Shoup, David E
collection PubMed
description BACKGROUND: The diffusion-limited reaction rate of a uniform spherical reactant is generalized to anisotropic reactivity. Previous work has shown that the protein model of a uniform sphere is unsatisfactory in many cases. Competition of ligands binding to two active sites, on a spherical enzyme or cell is studied analytically. RESULTS: The reaction rate constant is given for two sites at opposite ends of the species of interest. This is compared with twice the reaction rate for a single site. It is found that the competition between sites lowers the reaction rate over what is expected for two sites individually. Competition between sites does not show up, until the site half angle is greater than 30 degrees. CONCLUSIONS: Competition between sites is negligible until the site size becomes large. The competitive effect grows as theta becomes large. The maximum effect is given for theta = pi/2.
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spelling pubmed-40586952014-06-30 Diffusion-controlled reaction rates for two active sites on a sphere Shoup, David E BMC Biophys Research Article BACKGROUND: The diffusion-limited reaction rate of a uniform spherical reactant is generalized to anisotropic reactivity. Previous work has shown that the protein model of a uniform sphere is unsatisfactory in many cases. Competition of ligands binding to two active sites, on a spherical enzyme or cell is studied analytically. RESULTS: The reaction rate constant is given for two sites at opposite ends of the species of interest. This is compared with twice the reaction rate for a single site. It is found that the competition between sites lowers the reaction rate over what is expected for two sites individually. Competition between sites does not show up, until the site half angle is greater than 30 degrees. CONCLUSIONS: Competition between sites is negligible until the site size becomes large. The competitive effect grows as theta becomes large. The maximum effect is given for theta = pi/2. BioMed Central 2014-06-04 /pmc/articles/PMC4058695/ /pubmed/24982756 http://dx.doi.org/10.1186/2046-1682-7-3 Text en Copyright © 2014 Shoup; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Shoup, David E
Diffusion-controlled reaction rates for two active sites on a sphere
title Diffusion-controlled reaction rates for two active sites on a sphere
title_full Diffusion-controlled reaction rates for two active sites on a sphere
title_fullStr Diffusion-controlled reaction rates for two active sites on a sphere
title_full_unstemmed Diffusion-controlled reaction rates for two active sites on a sphere
title_short Diffusion-controlled reaction rates for two active sites on a sphere
title_sort diffusion-controlled reaction rates for two active sites on a sphere
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058695/
https://www.ncbi.nlm.nih.gov/pubmed/24982756
http://dx.doi.org/10.1186/2046-1682-7-3
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