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Diffusion-controlled reaction rates for two active sites on a sphere
BACKGROUND: The diffusion-limited reaction rate of a uniform spherical reactant is generalized to anisotropic reactivity. Previous work has shown that the protein model of a uniform sphere is unsatisfactory in many cases. Competition of ligands binding to two active sites, on a spherical enzyme or c...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058695/ https://www.ncbi.nlm.nih.gov/pubmed/24982756 http://dx.doi.org/10.1186/2046-1682-7-3 |
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author | Shoup, David E |
author_facet | Shoup, David E |
author_sort | Shoup, David E |
collection | PubMed |
description | BACKGROUND: The diffusion-limited reaction rate of a uniform spherical reactant is generalized to anisotropic reactivity. Previous work has shown that the protein model of a uniform sphere is unsatisfactory in many cases. Competition of ligands binding to two active sites, on a spherical enzyme or cell is studied analytically. RESULTS: The reaction rate constant is given for two sites at opposite ends of the species of interest. This is compared with twice the reaction rate for a single site. It is found that the competition between sites lowers the reaction rate over what is expected for two sites individually. Competition between sites does not show up, until the site half angle is greater than 30 degrees. CONCLUSIONS: Competition between sites is negligible until the site size becomes large. The competitive effect grows as theta becomes large. The maximum effect is given for theta = pi/2. |
format | Online Article Text |
id | pubmed-4058695 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-40586952014-06-30 Diffusion-controlled reaction rates for two active sites on a sphere Shoup, David E BMC Biophys Research Article BACKGROUND: The diffusion-limited reaction rate of a uniform spherical reactant is generalized to anisotropic reactivity. Previous work has shown that the protein model of a uniform sphere is unsatisfactory in many cases. Competition of ligands binding to two active sites, on a spherical enzyme or cell is studied analytically. RESULTS: The reaction rate constant is given for two sites at opposite ends of the species of interest. This is compared with twice the reaction rate for a single site. It is found that the competition between sites lowers the reaction rate over what is expected for two sites individually. Competition between sites does not show up, until the site half angle is greater than 30 degrees. CONCLUSIONS: Competition between sites is negligible until the site size becomes large. The competitive effect grows as theta becomes large. The maximum effect is given for theta = pi/2. BioMed Central 2014-06-04 /pmc/articles/PMC4058695/ /pubmed/24982756 http://dx.doi.org/10.1186/2046-1682-7-3 Text en Copyright © 2014 Shoup; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Shoup, David E Diffusion-controlled reaction rates for two active sites on a sphere |
title | Diffusion-controlled reaction rates for two active sites on a sphere |
title_full | Diffusion-controlled reaction rates for two active sites on a sphere |
title_fullStr | Diffusion-controlled reaction rates for two active sites on a sphere |
title_full_unstemmed | Diffusion-controlled reaction rates for two active sites on a sphere |
title_short | Diffusion-controlled reaction rates for two active sites on a sphere |
title_sort | diffusion-controlled reaction rates for two active sites on a sphere |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058695/ https://www.ncbi.nlm.nih.gov/pubmed/24982756 http://dx.doi.org/10.1186/2046-1682-7-3 |
work_keys_str_mv | AT shoupdavide diffusioncontrolledreactionratesfortwoactivesitesonasphere |