Cargando…

Pareto-optimal phylogenetic tree reconciliation

Motivation: Phylogenetic tree reconciliation is a widely used method for reconstructing the evolutionary histories of gene families and species, hosts and parasites and other dependent pairs of entities. Reconciliation is typically performed using maximum parsimony, in which each evolutionary event...

Descripción completa

Detalles Bibliográficos
Autores principales:	Libeskind-Hadas, Ran, Wu, Yi-Chieh, Bansal, Mukul S., Kellis, Manolis
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	Ismb 2014 Proceedings Papers Committee
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058917/ https://www.ncbi.nlm.nih.gov/pubmed/24932009 http://dx.doi.org/10.1093/bioinformatics/btu289

Ejemplares similares

Inferring Pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model
por: Mawhorter, Ross, et al.
Publicado: (2019)

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
por: Bansal, Mukul S., et al.
Publicado: (2012)

Metabolite identification through multiple kernel learning on fragmentation trees
por: Shen, Huibin, et al.
Publicado: (2014)

Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses
por: Libeskind-Hadas, Ran
Publicado: (2022)

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
por: Wu, Yi-Chieh, et al.
Publicado: (2014)

RidgeRace: ridge regression for continuous ancestral character estimation on phylogenetic trees
por: Kratsch, Christina, et al.
Publicado: (2014)

Detecting independent and recurrent copy number aberrations using interval graphs
por: Wu, Hsin-Ta, et al.
Publicado: (2014)

Accurate viral population assembly from ultra-deep sequencing data
por: Mangul, Serghei, et al.
Publicado: (2014)

Using association rule mining to determine promising secondary phenotyping hypotheses
por: Oellrich, Anika, et al.
Publicado: (2014)

Editorial
por: Batzoglou, Serafim, et al.
Publicado: (2014)

Graph-regularized dual Lasso for robust eQTL mapping
por: Cheng, Wei, et al.
Publicado: (2014)

Functional association networks as priors for gene regulatory network inference
por: Studham, Matthew E., et al.
Publicado: (2014)

AUTHOR INDEX
Publicado: (2014)

Privacy preserving protocol for detecting genetic relatives using rare variants
por: Hormozdiari, Farhad, et al.
Publicado: (2014)

Pipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics
por: Penzlin, Anke, et al.
Publicado: (2014)

Tertiary structure-based prediction of conformational B-cell epitopes through B factors
por: Ren, Jing, et al.
Publicado: (2014)

ExSPAnder: a universal repeat resolver for DNA fragment assembly
por: Prjibelski, Andrey D., et al.
Publicado: (2014)

Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation
por: Äijö, Tarmo, et al.
Publicado: (2014)

Inductive matrix completion for predicting gene–disease associations
por: Natarajan, Nagarajan, et al.
Publicado: (2014)

A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data
por: Hajirasouliha, Iman, et al.
Publicado: (2014)

Evaluating synteny for improved comparative studies
por: Ghiurcuta, Cristina G., et al.
Publicado: (2014)

Cross-study validation for the assessment of prediction algorithms
por: Bernau, Christoph, et al.
Publicado: (2014)

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles
por: Videm, Pavankumar, et al.
Publicado: (2014)

RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
por: Zhang, Zhaojun, et al.
Publicado: (2014)

DrugComboRanker: drug combination discovery based on target network analysis
por: Huang, Lei, et al.
Publicado: (2014)

Deep learning of the tissue-regulated splicing code
por: Leung, Michael K. K., et al.
Publicado: (2014)

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach
por: Kotera, Masaaki, et al.
Publicado: (2014)

An efficient parallel algorithm for accelerating computational protein design
por: Zhou, Yichao, et al.
Publicado: (2014)

Scale-space measures for graph topology link protein network architecture to function
por: Hulsman, Marc, et al.
Publicado: (2014)

Ragout—a reference-assisted assembly tool for bacterial genomes
por: Kolmogorov, Mikhail, et al.
Publicado: (2014)

Automated detection and tracking of many cells by using 4D live-cell imaging data
por: Tokunaga, Terumasa, et al.
Publicado: (2014)

MIRA: mutual information-based reporter algorithm for metabolic networks
por: Cicek, A. Ercument, et al.
Publicado: (2014)

Probabilistic method for detecting copy number variation in a fetal genome using maternal plasma sequencing
por: Rampášek, Ladislav, et al.
Publicado: (2014)

Robust clinical outcome prediction based on Bayesian analysis of transcriptional profiles and prior causal networks
por: Zarringhalam, Kourosh, et al.
Publicado: (2014)

Large scale analysis of signal reachability
por: Todor, Andrei, et al.
Publicado: (2014)

ISMB 2014 Proceedings Papers Committee
Publicado: (2014)

Stochastic EM-based TFBS motif discovery with MITSU
por: Kilpatrick, Alastair M., et al.
Publicado: (2014)

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence
por: Cao, Mengfei, et al.
Publicado: (2014)

Inferring gene ontologies from pairwise similarity data
por: Kramer, Michael, et al.
Publicado: (2014)

AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
por: Bao, Ergude, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_m0l2gv86v4mv49a0r69f8ekv3b