Cargando…

The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy

OBJECTIVE: We performed an updated meta-analysis, using a comprehensive strategy of a logistic regression and a model-free approach, to evaluate more precisely the role of the rs4444235 variant near the Bone morphogenetic protein-4 (BMP4) gene in susceptibility to colorectal cancer (CRC). METHODS: A...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Li, Su, Qinji, Li, Lixia, Lin, Xiaohui, Gan, Yu, Chen, Sidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4059743/
https://www.ncbi.nlm.nih.gov/pubmed/24932582
http://dx.doi.org/10.1371/journal.pone.0100133
_version_ 1782321280802881536
author Liu, Li
Su, Qinji
Li, Lixia
Lin, Xiaohui
Gan, Yu
Chen, Sidong
author_facet Liu, Li
Su, Qinji
Li, Lixia
Lin, Xiaohui
Gan, Yu
Chen, Sidong
author_sort Liu, Li
collection PubMed
description OBJECTIVE: We performed an updated meta-analysis, using a comprehensive strategy of a logistic regression and a model-free approach, to evaluate more precisely the role of the rs4444235 variant near the Bone morphogenetic protein-4 (BMP4) gene in susceptibility to colorectal cancer (CRC). METHODS: A total of 19 studies with 28770 cases and 28234 controls were included. Metagen system with logistic regression was applied to choose the most plausible genetic model for rs4444235. Generalized odds ratio (OR(G)) metric was used to provide a global test of relationship between rs4444235 and CRC risk. RESULTS: Metagen analysis suggested the rs4444235 fitted best to an additive model. In assessment of the additive model, heterogeneity was observed (P = 0.059, I(2) = 36.1), and pooled per-allele OR was 1.08 (95% CI = 1.05–1.11). Based on the model-free approach, pooled OR(G) was 1.09 (95% CI = 1.05–1.14) under a random-effect model. Stratified analyses suggested heterogeneity could be in part explained by population ethnicity, study design, sources of controls, and sample size. Sensitivity analysis further supported the robust stability of the current results, by showing similar pooled estimates before and after sequential removal of each study. CONCLUSIONS: This meta-analysis provides a robust estimate of the positive association between the rs4444235 and CRC risk and further emphasizes the importance of the rs4444235 in CRC risk prediction.
format Online
Article
Text
id pubmed-4059743
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-40597432014-06-19 The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy Liu, Li Su, Qinji Li, Lixia Lin, Xiaohui Gan, Yu Chen, Sidong PLoS One Research Article OBJECTIVE: We performed an updated meta-analysis, using a comprehensive strategy of a logistic regression and a model-free approach, to evaluate more precisely the role of the rs4444235 variant near the Bone morphogenetic protein-4 (BMP4) gene in susceptibility to colorectal cancer (CRC). METHODS: A total of 19 studies with 28770 cases and 28234 controls were included. Metagen system with logistic regression was applied to choose the most plausible genetic model for rs4444235. Generalized odds ratio (OR(G)) metric was used to provide a global test of relationship between rs4444235 and CRC risk. RESULTS: Metagen analysis suggested the rs4444235 fitted best to an additive model. In assessment of the additive model, heterogeneity was observed (P = 0.059, I(2) = 36.1), and pooled per-allele OR was 1.08 (95% CI = 1.05–1.11). Based on the model-free approach, pooled OR(G) was 1.09 (95% CI = 1.05–1.14) under a random-effect model. Stratified analyses suggested heterogeneity could be in part explained by population ethnicity, study design, sources of controls, and sample size. Sensitivity analysis further supported the robust stability of the current results, by showing similar pooled estimates before and after sequential removal of each study. CONCLUSIONS: This meta-analysis provides a robust estimate of the positive association between the rs4444235 and CRC risk and further emphasizes the importance of the rs4444235 in CRC risk prediction. Public Library of Science 2014-06-16 /pmc/articles/PMC4059743/ /pubmed/24932582 http://dx.doi.org/10.1371/journal.pone.0100133 Text en © 2014 Liu et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Liu, Li
Su, Qinji
Li, Lixia
Lin, Xiaohui
Gan, Yu
Chen, Sidong
The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy
title The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy
title_full The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy
title_fullStr The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy
title_full_unstemmed The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy
title_short The Common Variant rs4444235 near BMP4 Confers Genetic Susceptibility of Colorectal Cancer: An Updated Meta-Analysis Based on a Comprehensive Statistical Strategy
title_sort common variant rs4444235 near bmp4 confers genetic susceptibility of colorectal cancer: an updated meta-analysis based on a comprehensive statistical strategy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4059743/
https://www.ncbi.nlm.nih.gov/pubmed/24932582
http://dx.doi.org/10.1371/journal.pone.0100133
work_keys_str_mv AT liuli thecommonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT suqinji thecommonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT lilixia thecommonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT linxiaohui thecommonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT ganyu thecommonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT chensidong thecommonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT liuli commonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT suqinji commonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT lilixia commonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT linxiaohui commonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT ganyu commonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy
AT chensidong commonvariantrs4444235nearbmp4confersgeneticsusceptibilityofcolorectalcanceranupdatedmetaanalysisbasedonacomprehensivestatisticalstrategy