Cargando…

Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597

Rhizobium leguminosarum bv. trifolii strain WSM597 is an aerobic, motile, Gram-negative, non-spore-forming rod isolated from a root nodule of the annual clover Trifolium pallidum L. growing at Glencoe Research Station near Tacuarembó, Uruguay. This strain is generally ineffective for nitrogen (N(2))...

Descripción completa

Detalles Bibliográficos
Autores principales: Reeve, Wayne, Terpolilli, Jason, Melino, Vanessa, Ardley, Julie, Tian, Rui, De Meyer, Sofie, Tiwari, Ravi, Yates, Ronald, O’Hara, Graham, Howieson, John, Ninawi, Mohamed, Held, Brittany, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Wei, Chia-Lin, Huntemann, Marcel, Han, James, Chen, I-Min, Mavromatis, Konstantinos, Markowitz, Victor, Ivanova, Natalia, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Goodwin, Lynne, Woyke, Tanja, Kyrpides, Nikos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062625/
https://www.ncbi.nlm.nih.gov/pubmed/24976883
http://dx.doi.org/10.4056/sigs.4508258
_version_ 1782321679434776576
author Reeve, Wayne
Terpolilli, Jason
Melino, Vanessa
Ardley, Julie
Tian, Rui
De Meyer, Sofie
Tiwari, Ravi
Yates, Ronald
O’Hara, Graham
Howieson, John
Ninawi, Mohamed
Held, Brittany
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Wei, Chia-Lin
Huntemann, Marcel
Han, James
Chen, I-Min
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Ovchinnikova, Galina
Pagani, Ioanna
Pati, Amrita
Goodwin, Lynne
Woyke, Tanja
Kyrpides, Nikos
author_facet Reeve, Wayne
Terpolilli, Jason
Melino, Vanessa
Ardley, Julie
Tian, Rui
De Meyer, Sofie
Tiwari, Ravi
Yates, Ronald
O’Hara, Graham
Howieson, John
Ninawi, Mohamed
Held, Brittany
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Wei, Chia-Lin
Huntemann, Marcel
Han, James
Chen, I-Min
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Ovchinnikova, Galina
Pagani, Ioanna
Pati, Amrita
Goodwin, Lynne
Woyke, Tanja
Kyrpides, Nikos
author_sort Reeve, Wayne
collection PubMed
description Rhizobium leguminosarum bv. trifolii strain WSM597 is an aerobic, motile, Gram-negative, non-spore-forming rod isolated from a root nodule of the annual clover Trifolium pallidum L. growing at Glencoe Research Station near Tacuarembó, Uruguay. This strain is generally ineffective for nitrogen (N(2)) fixation with clovers of Mediterranean, North American and African origin, but is effective on the South American perennial clover T. polymorphum Poir. Here we describe the features of R. leguminosarum bv. trifolii strain WSM597, together with genome sequence information and annotation. The 7,634,384 bp high-quality-draft genome is arranged in 2 scaffolds of 53 contigs, contains 7,394 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.
format Online
Article
Text
id pubmed-4062625
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-40626252014-06-27 Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597 Reeve, Wayne Terpolilli, Jason Melino, Vanessa Ardley, Julie Tian, Rui De Meyer, Sofie Tiwari, Ravi Yates, Ronald O’Hara, Graham Howieson, John Ninawi, Mohamed Held, Brittany Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Wei, Chia-Lin Huntemann, Marcel Han, James Chen, I-Min Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Ovchinnikova, Galina Pagani, Ioanna Pati, Amrita Goodwin, Lynne Woyke, Tanja Kyrpides, Nikos Stand Genomic Sci Short Genome Reports Rhizobium leguminosarum bv. trifolii strain WSM597 is an aerobic, motile, Gram-negative, non-spore-forming rod isolated from a root nodule of the annual clover Trifolium pallidum L. growing at Glencoe Research Station near Tacuarembó, Uruguay. This strain is generally ineffective for nitrogen (N(2)) fixation with clovers of Mediterranean, North American and African origin, but is effective on the South American perennial clover T. polymorphum Poir. Here we describe the features of R. leguminosarum bv. trifolii strain WSM597, together with genome sequence information and annotation. The 7,634,384 bp high-quality-draft genome is arranged in 2 scaffolds of 53 contigs, contains 7,394 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program. Michigan State University 2013-12-15 /pmc/articles/PMC4062625/ /pubmed/24976883 http://dx.doi.org/10.4056/sigs.4508258 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Reeve, Wayne
Terpolilli, Jason
Melino, Vanessa
Ardley, Julie
Tian, Rui
De Meyer, Sofie
Tiwari, Ravi
Yates, Ronald
O’Hara, Graham
Howieson, John
Ninawi, Mohamed
Held, Brittany
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Wei, Chia-Lin
Huntemann, Marcel
Han, James
Chen, I-Min
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Ovchinnikova, Galina
Pagani, Ioanna
Pati, Amrita
Goodwin, Lynne
Woyke, Tanja
Kyrpides, Nikos
Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597
title Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597
title_full Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597
title_fullStr Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597
title_full_unstemmed Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597
title_short Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597
title_sort genome sequence of the south american clover-nodulating rhizobium leguminosarum bv. trifolii strain wsm597
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062625/
https://www.ncbi.nlm.nih.gov/pubmed/24976883
http://dx.doi.org/10.4056/sigs.4508258
work_keys_str_mv AT reevewayne genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT terpolillijason genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT melinovanessa genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT ardleyjulie genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT tianrui genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT demeyersofie genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT tiwariravi genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT yatesronald genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT oharagraham genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT howiesonjohn genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT ninawimohamed genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT heldbrittany genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT brucedavid genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT detterchris genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT tapiaroxanne genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT hancliff genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT weichialin genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT huntemannmarcel genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT hanjames genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT chenimin genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT mavromatiskonstantinos genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT markowitzvictor genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT ivanovanatalia genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT ovchinnikovagalina genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT paganiioanna genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT patiamrita genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT goodwinlynne genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT woyketanja genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597
AT kyrpidesnikos genomesequenceofthesouthamericanclovernodulatingrhizobiumleguminosarumbvtrifoliistrainwsm597