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Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert
Ensifer sp. TW10 is a novel N(2)-fixing bacterium isolated from a root nodule of the perennial legume Tephrosia wallichii Graham (known locally as Biyani) found in the Great Indian (or Thar) desert, a large arid region in the northwestern part of the Indian subcontinent. Strain TW10 is a Gram-negati...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062627/ https://www.ncbi.nlm.nih.gov/pubmed/24976887 http://dx.doi.org/10.4056/sigs.4598281 |
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author | Tak, Nisha Gehlot, Hukam S Kaushik, Muskan Choudhary, Sunil Tiwari, Ravi Tian, Rui Hill, Yvette Bräu, Lambert Goodwin, Lynne Han, James Liolios, Konstantinos Huntemann, Marcel Palaniappan, Krishna Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Markowitz, Victor Woyke, Tanja Kyrpides, Nikos Reeve, Wayne |
author_facet | Tak, Nisha Gehlot, Hukam S Kaushik, Muskan Choudhary, Sunil Tiwari, Ravi Tian, Rui Hill, Yvette Bräu, Lambert Goodwin, Lynne Han, James Liolios, Konstantinos Huntemann, Marcel Palaniappan, Krishna Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Markowitz, Victor Woyke, Tanja Kyrpides, Nikos Reeve, Wayne |
author_sort | Tak, Nisha |
collection | PubMed |
description | Ensifer sp. TW10 is a novel N(2)-fixing bacterium isolated from a root nodule of the perennial legume Tephrosia wallichii Graham (known locally as Biyani) found in the Great Indian (or Thar) desert, a large arid region in the northwestern part of the Indian subcontinent. Strain TW10 is a Gram-negative, rod shaped, aerobic, motile, non-spore forming, species of root nodule bacteria (RNB) that promiscuously nodulates legumes in Thar Desert alkaline soil. It is fast growing, acid-producing, and tolerates up to 2% NaCl and capable of growth at 40(o)C. In this report we describe for the first time the primary features of this Thar Desert soil saprophyte together with genome sequence information and annotation. The 6,802,256 bp genome has a GC content of 62% and is arranged into 57 scaffolds containing 6,470 protein-coding genes, 73 RNA genes and a single rRNA operon. This genome is one of 100 RNB genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project. |
format | Online Article Text |
id | pubmed-4062627 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-40626272014-06-27 Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert Tak, Nisha Gehlot, Hukam S Kaushik, Muskan Choudhary, Sunil Tiwari, Ravi Tian, Rui Hill, Yvette Bräu, Lambert Goodwin, Lynne Han, James Liolios, Konstantinos Huntemann, Marcel Palaniappan, Krishna Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Markowitz, Victor Woyke, Tanja Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Reports Ensifer sp. TW10 is a novel N(2)-fixing bacterium isolated from a root nodule of the perennial legume Tephrosia wallichii Graham (known locally as Biyani) found in the Great Indian (or Thar) desert, a large arid region in the northwestern part of the Indian subcontinent. Strain TW10 is a Gram-negative, rod shaped, aerobic, motile, non-spore forming, species of root nodule bacteria (RNB) that promiscuously nodulates legumes in Thar Desert alkaline soil. It is fast growing, acid-producing, and tolerates up to 2% NaCl and capable of growth at 40(o)C. In this report we describe for the first time the primary features of this Thar Desert soil saprophyte together with genome sequence information and annotation. The 6,802,256 bp genome has a GC content of 62% and is arranged into 57 scaffolds containing 6,470 protein-coding genes, 73 RNA genes and a single rRNA operon. This genome is one of 100 RNB genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project. Michigan State University 2013-12-15 /pmc/articles/PMC4062627/ /pubmed/24976887 http://dx.doi.org/10.4056/sigs.4598281 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Tak, Nisha Gehlot, Hukam S Kaushik, Muskan Choudhary, Sunil Tiwari, Ravi Tian, Rui Hill, Yvette Bräu, Lambert Goodwin, Lynne Han, James Liolios, Konstantinos Huntemann, Marcel Palaniappan, Krishna Pati, Amrita Mavromatis, Konstantinos Ivanova, Natalia Markowitz, Victor Woyke, Tanja Kyrpides, Nikos Reeve, Wayne Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert |
title | Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert |
title_full | Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert |
title_fullStr | Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert |
title_full_unstemmed | Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert |
title_short | Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert |
title_sort | genome sequence of ensifer sp. tw10; a tephrosia wallichii (biyani) microsymbiont native to the indian thar desert |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062627/ https://www.ncbi.nlm.nih.gov/pubmed/24976887 http://dx.doi.org/10.4056/sigs.4598281 |
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