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Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production
Enterobacter sp. IIT-BT 08 belongs to Phylum: Proteobacteria, Class: Gammaproteobacteria, Order: Enterobacteriales, Family: Enterobacteriaceae. The organism was isolated from the leaves of a local plant near the Kharagpur railway station, Kharagpur, West Bengal, India. It has been extensively studie...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062630/ https://www.ncbi.nlm.nih.gov/pubmed/24976892 http://dx.doi.org/10.4056/sigs.4348035 |
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author | Khanna, Namita Ghosh, Ananta Kumar Huntemann, Marcel Deshpande, Shweta Han, James Chen, Amy Kyrpides, Nikos Mavrommatis, Kostas Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Woyke, Tanja Teshima, Hazuki Chertkov, Olga Daligault, Hajnalka Davenport, Karen Gu, Wei Munk, Christine Zhang, Xiaojing Bruce, David Detter, Chris Xu, Yan Quintana, Beverly Reitenga, Krista Kunde, Yulia Green, Lance Erkkila, Tracy Han, Cliff Brambilla, Evelyne-Marie Lang, Elke Klenk, Hans-Peter Goodwin, Lynne Chain, Patrick Das, Debabrata |
author_facet | Khanna, Namita Ghosh, Ananta Kumar Huntemann, Marcel Deshpande, Shweta Han, James Chen, Amy Kyrpides, Nikos Mavrommatis, Kostas Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Woyke, Tanja Teshima, Hazuki Chertkov, Olga Daligault, Hajnalka Davenport, Karen Gu, Wei Munk, Christine Zhang, Xiaojing Bruce, David Detter, Chris Xu, Yan Quintana, Beverly Reitenga, Krista Kunde, Yulia Green, Lance Erkkila, Tracy Han, Cliff Brambilla, Evelyne-Marie Lang, Elke Klenk, Hans-Peter Goodwin, Lynne Chain, Patrick Das, Debabrata |
author_sort | Khanna, Namita |
collection | PubMed |
description | Enterobacter sp. IIT-BT 08 belongs to Phylum: Proteobacteria, Class: Gammaproteobacteria, Order: Enterobacteriales, Family: Enterobacteriaceae. The organism was isolated from the leaves of a local plant near the Kharagpur railway station, Kharagpur, West Bengal, India. It has been extensively studied for fermentative hydrogen production because of its high hydrogen yield. For further enhancement of hydrogen production by strain development, complete genome sequence analysis was carried out. Sequence analysis revealed that the genome was linear, 4.67 Mbp long and had a GC content of 56.01%. The genome properties encode 4,393 protein-coding and 179 RNA genes. Additionally, a putative pathway of hydrogen production was suggested based on the presence of formate hydrogen lyase complex and other related genes identified in the genome. Thus, in the present study we describe the specific properties of the organism and the generation, annotation and analysis of its genome sequence as well as discuss the putative pathway of hydrogen production by this organism. |
format | Online Article Text |
id | pubmed-4062630 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-40626302014-06-27 Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production Khanna, Namita Ghosh, Ananta Kumar Huntemann, Marcel Deshpande, Shweta Han, James Chen, Amy Kyrpides, Nikos Mavrommatis, Kostas Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Woyke, Tanja Teshima, Hazuki Chertkov, Olga Daligault, Hajnalka Davenport, Karen Gu, Wei Munk, Christine Zhang, Xiaojing Bruce, David Detter, Chris Xu, Yan Quintana, Beverly Reitenga, Krista Kunde, Yulia Green, Lance Erkkila, Tracy Han, Cliff Brambilla, Evelyne-Marie Lang, Elke Klenk, Hans-Peter Goodwin, Lynne Chain, Patrick Das, Debabrata Stand Genomic Sci Short Genome Reports Enterobacter sp. IIT-BT 08 belongs to Phylum: Proteobacteria, Class: Gammaproteobacteria, Order: Enterobacteriales, Family: Enterobacteriaceae. The organism was isolated from the leaves of a local plant near the Kharagpur railway station, Kharagpur, West Bengal, India. It has been extensively studied for fermentative hydrogen production because of its high hydrogen yield. For further enhancement of hydrogen production by strain development, complete genome sequence analysis was carried out. Sequence analysis revealed that the genome was linear, 4.67 Mbp long and had a GC content of 56.01%. The genome properties encode 4,393 protein-coding and 179 RNA genes. Additionally, a putative pathway of hydrogen production was suggested based on the presence of formate hydrogen lyase complex and other related genes identified in the genome. Thus, in the present study we describe the specific properties of the organism and the generation, annotation and analysis of its genome sequence as well as discuss the putative pathway of hydrogen production by this organism. Michigan State University 2013-12-15 /pmc/articles/PMC4062630/ /pubmed/24976892 http://dx.doi.org/10.4056/sigs.4348035 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Khanna, Namita Ghosh, Ananta Kumar Huntemann, Marcel Deshpande, Shweta Han, James Chen, Amy Kyrpides, Nikos Mavrommatis, Kostas Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Woyke, Tanja Teshima, Hazuki Chertkov, Olga Daligault, Hajnalka Davenport, Karen Gu, Wei Munk, Christine Zhang, Xiaojing Bruce, David Detter, Chris Xu, Yan Quintana, Beverly Reitenga, Krista Kunde, Yulia Green, Lance Erkkila, Tracy Han, Cliff Brambilla, Evelyne-Marie Lang, Elke Klenk, Hans-Peter Goodwin, Lynne Chain, Patrick Das, Debabrata Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production |
title | Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production |
title_full | Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production |
title_fullStr | Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production |
title_full_unstemmed | Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production |
title_short | Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production |
title_sort | complete genome sequence of enterobacter sp. iit-bt 08: a potential microbial strain for high rate hydrogen production |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062630/ https://www.ncbi.nlm.nih.gov/pubmed/24976892 http://dx.doi.org/10.4056/sigs.4348035 |
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