Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

Rhizobium leguminosarum bv. trifolii strain TA1 is an aerobic, motile, Gram-negative, non-spore-forming rod that is an effective nitrogen fixing microsymbiont on the perennial clovers originating from Europe and the Mediterranean basin. TA1 however is ineffective with many annual and perennial clove...

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Autores principales: Reeve, Wayne, Tian, Rui, De Meyer, Sofie, Melino, Vanessa, Terpolilli, Jason, Ardley, Julie, Tiwari, Ravi, Howieson, John, Yates, Ronald, O’Hara, Graham, Ninawi, Mohamed, Teshima, Hazuki, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Wei, Chia-Lin, Huntemann, Marcel, Han, James, Chen, I-Min, Mavromatis, Konstantinos, Markowitz, Victor, Ivanova, Natalia, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Goodwin, Lynne, Pitluck, Sam, Woyke, Tanja, Kyrpides, Nikos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Short Genome Reports
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062637/
https://www.ncbi.nlm.nih.gov/pubmed/24976881
http://dx.doi.org/10.4056/sigs.4488254
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author Reeve, Wayne
Tian, Rui
De Meyer, Sofie
Melino, Vanessa
Terpolilli, Jason
Ardley, Julie
Tiwari, Ravi
Howieson, John
Yates, Ronald
O’Hara, Graham
Ninawi, Mohamed
Teshima, Hazuki
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Wei, Chia-Lin
Huntemann, Marcel
Han, James
Chen, I-Min
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Ovchinnikova, Galina
Pagani, Ioanna
Pati, Amrita
Goodwin, Lynne
Pitluck, Sam
Woyke, Tanja
Kyrpides, Nikos
author_facet Reeve, Wayne
Tian, Rui
De Meyer, Sofie
Melino, Vanessa
Terpolilli, Jason
Ardley, Julie
Tiwari, Ravi
Howieson, John
Yates, Ronald
O’Hara, Graham
Ninawi, Mohamed
Teshima, Hazuki
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Wei, Chia-Lin
Huntemann, Marcel
Han, James
Chen, I-Min
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Ovchinnikova, Galina
Pagani, Ioanna
Pati, Amrita
Goodwin, Lynne
Pitluck, Sam
Woyke, Tanja
Kyrpides, Nikos
author_sort Reeve, Wayne
collection PubMed
description Rhizobium leguminosarum bv. trifolii strain TA1 is an aerobic, motile, Gram-negative, non-spore-forming rod that is an effective nitrogen fixing microsymbiont on the perennial clovers originating from Europe and the Mediterranean basin. TA1 however is ineffective with many annual and perennial clovers originating from Africa and America. Here we describe the features of R. leguminosarum bv. trifolii strain TA1, together with genome sequence information and annotation. The 8,618,824 bp high-quality-draft genome is arranged in a 6 scaffold of 32 contigs, contains 8,493 protein-coding genes and 83 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.
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spelling pubmed-40626372014-06-27 Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1 Reeve, Wayne Tian, Rui De Meyer, Sofie Melino, Vanessa Terpolilli, Jason Ardley, Julie Tiwari, Ravi Howieson, John Yates, Ronald O’Hara, Graham Ninawi, Mohamed Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Wei, Chia-Lin Huntemann, Marcel Han, James Chen, I-Min Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Ovchinnikova, Galina Pagani, Ioanna Pati, Amrita Goodwin, Lynne Pitluck, Sam Woyke, Tanja Kyrpides, Nikos Stand Genomic Sci Short Genome Reports Rhizobium leguminosarum bv. trifolii strain TA1 is an aerobic, motile, Gram-negative, non-spore-forming rod that is an effective nitrogen fixing microsymbiont on the perennial clovers originating from Europe and the Mediterranean basin. TA1 however is ineffective with many annual and perennial clovers originating from Africa and America. Here we describe the features of R. leguminosarum bv. trifolii strain TA1, together with genome sequence information and annotation. The 8,618,824 bp high-quality-draft genome is arranged in a 6 scaffold of 32 contigs, contains 8,493 protein-coding genes and 83 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program. Michigan State University 2013-12-15 /pmc/articles/PMC4062637/ /pubmed/24976881 http://dx.doi.org/10.4056/sigs.4488254 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Reeve, Wayne
Tian, Rui
De Meyer, Sofie
Melino, Vanessa
Terpolilli, Jason
Ardley, Julie
Tiwari, Ravi
Howieson, John
Yates, Ronald
O’Hara, Graham
Ninawi, Mohamed
Teshima, Hazuki
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Wei, Chia-Lin
Huntemann, Marcel
Han, James
Chen, I-Min
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Ovchinnikova, Galina
Pagani, Ioanna
Pati, Amrita
Goodwin, Lynne
Pitluck, Sam
Woyke, Tanja
Kyrpides, Nikos
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
title Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
title_full Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
title_fullStr Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
title_full_unstemmed Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
title_short Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
title_sort genome sequence of the clover-nodulating rhizobium leguminosarum bv. trifolii strain ta1
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062637/
https://www.ncbi.nlm.nih.gov/pubmed/24976881
http://dx.doi.org/10.4056/sigs.4488254
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