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Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417
Bradyrhizobium sp. strain WSM1417 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen (N(2)) fixing root nodule of Lupinus sp. collected in Papudo, Chile, in 1995. However, this microsymbiont is a poorly effective N(2) fixer with the legume host L...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062640/ https://www.ncbi.nlm.nih.gov/pubmed/24976884 http://dx.doi.org/10.4056/sigs.4518260 |
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author | Reeve, Wayne Terpolilli, Jason Melino, Vanessa Ardley, Julie Tian, Rui De Meyer, Sofie Tiwari, Ravi Yates, Ronald O’Hara, Graham Howieson, John Ninawi, Mohamed Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Wei, Chia-Lin Huntemann, Marcel Han, James Chen, I-Min Mavrommatis, Konstantinos Markowitz, Victor Ivanova, Natalia Ovchinnikova, Galina Pagani, Ioanna Pati, Amrita Goodwin, Lynne Peters, Lin Woyke, Tanja Kyrpides, Nikos |
author_facet | Reeve, Wayne Terpolilli, Jason Melino, Vanessa Ardley, Julie Tian, Rui De Meyer, Sofie Tiwari, Ravi Yates, Ronald O’Hara, Graham Howieson, John Ninawi, Mohamed Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Wei, Chia-Lin Huntemann, Marcel Han, James Chen, I-Min Mavrommatis, Konstantinos Markowitz, Victor Ivanova, Natalia Ovchinnikova, Galina Pagani, Ioanna Pati, Amrita Goodwin, Lynne Peters, Lin Woyke, Tanja Kyrpides, Nikos |
author_sort | Reeve, Wayne |
collection | PubMed |
description | Bradyrhizobium sp. strain WSM1417 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen (N(2)) fixing root nodule of Lupinus sp. collected in Papudo, Chile, in 1995. However, this microsymbiont is a poorly effective N(2) fixer with the legume host Lupinus angustifolius L.; a lupin species of considerable economic importance in both Chile and Australia. The symbiosis formed with L. angustifolius produces less than half of the dry matter achieved by the symbioses with commercial inoculant strains such as Bradyrhizobium sp. strain WSM471. Therefore, WSM1417 is an important candidate strain with which to investigate the genetics of effective N(2) fixation in the lupin-bradyrhizobia symbioses. Here we describe the features of Bradyrhizobium sp. strain WSM1417, together with genome sequence information and annotation. The 8,048,963 bp high-quality-draft genome is arranged in a single scaffold of 2 contigs, contains 7,695 protein-coding genes and 77 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program. |
format | Online Article Text |
id | pubmed-4062640 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-40626402014-06-27 Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417 Reeve, Wayne Terpolilli, Jason Melino, Vanessa Ardley, Julie Tian, Rui De Meyer, Sofie Tiwari, Ravi Yates, Ronald O’Hara, Graham Howieson, John Ninawi, Mohamed Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Wei, Chia-Lin Huntemann, Marcel Han, James Chen, I-Min Mavrommatis, Konstantinos Markowitz, Victor Ivanova, Natalia Ovchinnikova, Galina Pagani, Ioanna Pati, Amrita Goodwin, Lynne Peters, Lin Woyke, Tanja Kyrpides, Nikos Stand Genomic Sci Short Genome Reports Bradyrhizobium sp. strain WSM1417 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen (N(2)) fixing root nodule of Lupinus sp. collected in Papudo, Chile, in 1995. However, this microsymbiont is a poorly effective N(2) fixer with the legume host Lupinus angustifolius L.; a lupin species of considerable economic importance in both Chile and Australia. The symbiosis formed with L. angustifolius produces less than half of the dry matter achieved by the symbioses with commercial inoculant strains such as Bradyrhizobium sp. strain WSM471. Therefore, WSM1417 is an important candidate strain with which to investigate the genetics of effective N(2) fixation in the lupin-bradyrhizobia symbioses. Here we describe the features of Bradyrhizobium sp. strain WSM1417, together with genome sequence information and annotation. The 8,048,963 bp high-quality-draft genome is arranged in a single scaffold of 2 contigs, contains 7,695 protein-coding genes and 77 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program. Michigan State University 2013-12-15 /pmc/articles/PMC4062640/ /pubmed/24976884 http://dx.doi.org/10.4056/sigs.4518260 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Reeve, Wayne Terpolilli, Jason Melino, Vanessa Ardley, Julie Tian, Rui De Meyer, Sofie Tiwari, Ravi Yates, Ronald O’Hara, Graham Howieson, John Ninawi, Mohamed Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Wei, Chia-Lin Huntemann, Marcel Han, James Chen, I-Min Mavrommatis, Konstantinos Markowitz, Victor Ivanova, Natalia Ovchinnikova, Galina Pagani, Ioanna Pati, Amrita Goodwin, Lynne Peters, Lin Woyke, Tanja Kyrpides, Nikos Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417 |
title | Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417 |
title_full | Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417 |
title_fullStr | Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417 |
title_full_unstemmed | Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417 |
title_short | Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417 |
title_sort | genome sequence of the lupin-nodulating bradyrhizobium sp. strain wsm1417 |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062640/ https://www.ncbi.nlm.nih.gov/pubmed/24976884 http://dx.doi.org/10.4056/sigs.4518260 |
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