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BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation

Habitat fragmentation studies have produced complex results that are challenging to synthesize. Inconsistencies among studies may result from variation in the choice of landscape metrics and response variables, which is often compounded by a lack of key statistical or methodological information. Col...

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Autores principales: Pfeifer, Marion, Lefebvre, Veronique, Gardner, Toby A, Arroyo-Rodriguez, Victor, Baeten, Lander, Banks-Leite, Cristina, Barlow, Jos, Betts, Matthew G, Brunet, Joerg, Cerezo, Alexis, Cisneros, Laura M, Collard, Stuart, D'Cruze, Neil, da Silva Motta, Catarina, Duguay, Stephanie, Eggermont, Hilde, Eigenbrod, Felix, Hadley, Adam S, Hanson, Thor R, Hawes, Joseph E, Heartsill Scalley, Tamara, Klingbeil, Brian T, Kolb, Annette, Kormann, Urs, Kumar, Sunil, Lachat, Thibault, Lakeman Fraser, Poppy, Lantschner, Victoria, Laurance, William F, Leal, Inara R, Lens, Luc, Marsh, Charles J, Medina-Rangel, Guido F, Melles, Stephanie, Mezger, Dirk, Oldekop, Johan A, Overal, William L, Owen, Charlotte, Peres, Carlos A, Phalan, Ben, Pidgeon, Anna M, Pilia, Oriana, Possingham, Hugh P, Possingham, Max L, Raheem, Dinarzarde C, Ribeiro, Danilo B, Ribeiro Neto, Jose D, Douglas Robinson, W, Robinson, Richard, Rytwinski, Trina, Scherber, Christoph, Slade, Eleanor M, Somarriba, Eduardo, Stouffer, Philip C, Struebig, Matthew J, Tylianakis, Jason M, Tscharntke, Teja, Tyre, Andrew J, Urbina Cardona, Jose N, Vasconcelos, Heraldo L, Wearn, Oliver, Wells, Konstans, Willig, Michael R, Wood, Eric, Young, Richard P, Bradley, Andrew V, Ewers, Robert M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063456/
https://www.ncbi.nlm.nih.gov/pubmed/24967073
http://dx.doi.org/10.1002/ece3.1036
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author Pfeifer, Marion
Lefebvre, Veronique
Gardner, Toby A
Arroyo-Rodriguez, Victor
Baeten, Lander
Banks-Leite, Cristina
Barlow, Jos
Betts, Matthew G
Brunet, Joerg
Cerezo, Alexis
Cisneros, Laura M
Collard, Stuart
D'Cruze, Neil
da Silva Motta, Catarina
Duguay, Stephanie
Eggermont, Hilde
Eigenbrod, Felix
Hadley, Adam S
Hanson, Thor R
Hawes, Joseph E
Heartsill Scalley, Tamara
Klingbeil, Brian T
Kolb, Annette
Kormann, Urs
Kumar, Sunil
Lachat, Thibault
Lakeman Fraser, Poppy
Lantschner, Victoria
Laurance, William F
Leal, Inara R
Lens, Luc
Marsh, Charles J
Medina-Rangel, Guido F
Melles, Stephanie
Mezger, Dirk
Oldekop, Johan A
Overal, William L
Owen, Charlotte
Peres, Carlos A
Phalan, Ben
Pidgeon, Anna M
Pilia, Oriana
Possingham, Hugh P
Possingham, Max L
Raheem, Dinarzarde C
Ribeiro, Danilo B
Ribeiro Neto, Jose D
Douglas Robinson, W
Robinson, Richard
Rytwinski, Trina
Scherber, Christoph
Slade, Eleanor M
Somarriba, Eduardo
Stouffer, Philip C
Struebig, Matthew J
Tylianakis, Jason M
Tscharntke, Teja
Tyre, Andrew J
Urbina Cardona, Jose N
Vasconcelos, Heraldo L
Wearn, Oliver
Wells, Konstans
Willig, Michael R
Wood, Eric
Young, Richard P
Bradley, Andrew V
Ewers, Robert M
author_facet Pfeifer, Marion
Lefebvre, Veronique
Gardner, Toby A
Arroyo-Rodriguez, Victor
Baeten, Lander
Banks-Leite, Cristina
Barlow, Jos
Betts, Matthew G
Brunet, Joerg
Cerezo, Alexis
Cisneros, Laura M
Collard, Stuart
D'Cruze, Neil
da Silva Motta, Catarina
Duguay, Stephanie
Eggermont, Hilde
Eigenbrod, Felix
Hadley, Adam S
Hanson, Thor R
Hawes, Joseph E
Heartsill Scalley, Tamara
Klingbeil, Brian T
Kolb, Annette
Kormann, Urs
Kumar, Sunil
Lachat, Thibault
Lakeman Fraser, Poppy
Lantschner, Victoria
Laurance, William F
Leal, Inara R
Lens, Luc
Marsh, Charles J
Medina-Rangel, Guido F
Melles, Stephanie
Mezger, Dirk
Oldekop, Johan A
Overal, William L
Owen, Charlotte
Peres, Carlos A
Phalan, Ben
Pidgeon, Anna M
Pilia, Oriana
Possingham, Hugh P
Possingham, Max L
Raheem, Dinarzarde C
Ribeiro, Danilo B
Ribeiro Neto, Jose D
Douglas Robinson, W
Robinson, Richard
Rytwinski, Trina
Scherber, Christoph
Slade, Eleanor M
Somarriba, Eduardo
Stouffer, Philip C
Struebig, Matthew J
Tylianakis, Jason M
Tscharntke, Teja
Tyre, Andrew J
Urbina Cardona, Jose N
Vasconcelos, Heraldo L
Wearn, Oliver
Wells, Konstans
Willig, Michael R
Wood, Eric
Young, Richard P
Bradley, Andrew V
Ewers, Robert M
author_sort Pfeifer, Marion
collection PubMed
description Habitat fragmentation studies have produced complex results that are challenging to synthesize. Inconsistencies among studies may result from variation in the choice of landscape metrics and response variables, which is often compounded by a lack of key statistical or methodological information. Collating primary datasets on biodiversity responses to fragmentation in a consistent and flexible database permits simple data retrieval for subsequent analyses. We present a relational database that links such field data to taxonomic nomenclature, spatial and temporal plot attributes, and environmental characteristics. Field assessments include measurements of the response(s) (e.g., presence, abundance, ground cover) of one or more species linked to plots in fragments within a partially forested landscape. The database currently holds 9830 unique species recorded in plots of 58 unique landscapes in six of eight realms: mammals 315, birds 1286, herptiles 460, insects 4521, spiders 204, other arthropods 85, gastropods 70, annelids 8, platyhelminthes 4, Onychophora 2, vascular plants 2112, nonvascular plants and lichens 320, and fungi 449. Three landscapes were sampled as long-term time series (>10 years). Seven hundred and eleven species are found in two or more landscapes. Consolidating the substantial amount of primary data available on biodiversity responses to fragmentation in the context of land-use change and natural disturbances is an essential part of understanding the effects of increasing anthropogenic pressures on land. The consistent format of this database facilitates testing of generalizations concerning biologic responses to fragmentation across diverse systems and taxa. It also allows the re-examination of existing datasets with alternative landscape metrics and robust statistical methods, for example, helping to address pseudo-replication problems. The database can thus help researchers in producing broad syntheses of the effects of land use. The database is dynamic and inclusive, and contributions from individual and large-scale data-collection efforts are welcome.
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spelling pubmed-40634562014-06-25 BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation Pfeifer, Marion Lefebvre, Veronique Gardner, Toby A Arroyo-Rodriguez, Victor Baeten, Lander Banks-Leite, Cristina Barlow, Jos Betts, Matthew G Brunet, Joerg Cerezo, Alexis Cisneros, Laura M Collard, Stuart D'Cruze, Neil da Silva Motta, Catarina Duguay, Stephanie Eggermont, Hilde Eigenbrod, Felix Hadley, Adam S Hanson, Thor R Hawes, Joseph E Heartsill Scalley, Tamara Klingbeil, Brian T Kolb, Annette Kormann, Urs Kumar, Sunil Lachat, Thibault Lakeman Fraser, Poppy Lantschner, Victoria Laurance, William F Leal, Inara R Lens, Luc Marsh, Charles J Medina-Rangel, Guido F Melles, Stephanie Mezger, Dirk Oldekop, Johan A Overal, William L Owen, Charlotte Peres, Carlos A Phalan, Ben Pidgeon, Anna M Pilia, Oriana Possingham, Hugh P Possingham, Max L Raheem, Dinarzarde C Ribeiro, Danilo B Ribeiro Neto, Jose D Douglas Robinson, W Robinson, Richard Rytwinski, Trina Scherber, Christoph Slade, Eleanor M Somarriba, Eduardo Stouffer, Philip C Struebig, Matthew J Tylianakis, Jason M Tscharntke, Teja Tyre, Andrew J Urbina Cardona, Jose N Vasconcelos, Heraldo L Wearn, Oliver Wells, Konstans Willig, Michael R Wood, Eric Young, Richard P Bradley, Andrew V Ewers, Robert M Ecol Evol Original Research Habitat fragmentation studies have produced complex results that are challenging to synthesize. Inconsistencies among studies may result from variation in the choice of landscape metrics and response variables, which is often compounded by a lack of key statistical or methodological information. Collating primary datasets on biodiversity responses to fragmentation in a consistent and flexible database permits simple data retrieval for subsequent analyses. We present a relational database that links such field data to taxonomic nomenclature, spatial and temporal plot attributes, and environmental characteristics. Field assessments include measurements of the response(s) (e.g., presence, abundance, ground cover) of one or more species linked to plots in fragments within a partially forested landscape. The database currently holds 9830 unique species recorded in plots of 58 unique landscapes in six of eight realms: mammals 315, birds 1286, herptiles 460, insects 4521, spiders 204, other arthropods 85, gastropods 70, annelids 8, platyhelminthes 4, Onychophora 2, vascular plants 2112, nonvascular plants and lichens 320, and fungi 449. Three landscapes were sampled as long-term time series (>10 years). Seven hundred and eleven species are found in two or more landscapes. Consolidating the substantial amount of primary data available on biodiversity responses to fragmentation in the context of land-use change and natural disturbances is an essential part of understanding the effects of increasing anthropogenic pressures on land. The consistent format of this database facilitates testing of generalizations concerning biologic responses to fragmentation across diverse systems and taxa. It also allows the re-examination of existing datasets with alternative landscape metrics and robust statistical methods, for example, helping to address pseudo-replication problems. The database can thus help researchers in producing broad syntheses of the effects of land use. The database is dynamic and inclusive, and contributions from individual and large-scale data-collection efforts are welcome. BlackWell Publishing Ltd 2014-05 2014-03-27 /pmc/articles/PMC4063456/ /pubmed/24967073 http://dx.doi.org/10.1002/ece3.1036 Text en © 2014 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Pfeifer, Marion
Lefebvre, Veronique
Gardner, Toby A
Arroyo-Rodriguez, Victor
Baeten, Lander
Banks-Leite, Cristina
Barlow, Jos
Betts, Matthew G
Brunet, Joerg
Cerezo, Alexis
Cisneros, Laura M
Collard, Stuart
D'Cruze, Neil
da Silva Motta, Catarina
Duguay, Stephanie
Eggermont, Hilde
Eigenbrod, Felix
Hadley, Adam S
Hanson, Thor R
Hawes, Joseph E
Heartsill Scalley, Tamara
Klingbeil, Brian T
Kolb, Annette
Kormann, Urs
Kumar, Sunil
Lachat, Thibault
Lakeman Fraser, Poppy
Lantschner, Victoria
Laurance, William F
Leal, Inara R
Lens, Luc
Marsh, Charles J
Medina-Rangel, Guido F
Melles, Stephanie
Mezger, Dirk
Oldekop, Johan A
Overal, William L
Owen, Charlotte
Peres, Carlos A
Phalan, Ben
Pidgeon, Anna M
Pilia, Oriana
Possingham, Hugh P
Possingham, Max L
Raheem, Dinarzarde C
Ribeiro, Danilo B
Ribeiro Neto, Jose D
Douglas Robinson, W
Robinson, Richard
Rytwinski, Trina
Scherber, Christoph
Slade, Eleanor M
Somarriba, Eduardo
Stouffer, Philip C
Struebig, Matthew J
Tylianakis, Jason M
Tscharntke, Teja
Tyre, Andrew J
Urbina Cardona, Jose N
Vasconcelos, Heraldo L
Wearn, Oliver
Wells, Konstans
Willig, Michael R
Wood, Eric
Young, Richard P
Bradley, Andrew V
Ewers, Robert M
BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation
title BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation
title_full BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation
title_fullStr BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation
title_full_unstemmed BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation
title_short BIOFRAG – a new database for analyzing BIOdiversity responses to forest FRAGmentation
title_sort biofrag – a new database for analyzing biodiversity responses to forest fragmentation
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063456/
https://www.ncbi.nlm.nih.gov/pubmed/24967073
http://dx.doi.org/10.1002/ece3.1036
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