Cargando…

Assessment of RainDrop BS-seq as a method for large-scale, targeted bisulfite sequencing

We present a systematic assessment of RainDrop BS-seq, a novel method for large-scale, targeted bisulfite sequencing using microdroplet-based PCR amplification coupled with next-generation sequencing. We compared DNA methylation levels at 498 target loci (1001 PCR amplicons) in human whole blood, os...

Descripción completa

Detalles Bibliográficos
Autores principales:	Paul, Dirk S, Guilhamon, Paul, Karpathakis, Anna, Butcher, Lee M, Thirlwell, Christina, Feber, Andrew, Beck, Stephan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Landes Bioscience 2014
Materias:	Brief Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063826/ https://www.ncbi.nlm.nih.gov/pubmed/24518816 http://dx.doi.org/10.4161/epi.28041

Ejemplares similares

RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
por: Niebler, Stefan, et al.
Publicado: (2020)

BS-SNPer: SNP calling in bisulfite-seq data
por: Gao, Shengjie, et al.
Publicado: (2015)

Dataset on raindrop size distribution, raindrop fall velocity and precipitation data measured by disdrometers and rain gauges over Peruvian central Andes (12.0°S)
por: Valdivia, Jairo M., et al.
Publicado: (2020)

BS Seeker: precise mapping for bisulfite sequencing
por: Chen, Pao-Yang, et al.
Publicado: (2010)

The Work of the Rain-Drop
Publicado: (1892)

Rare Disease Research Partnership (RAinDRoP): a collaborative approach to identify research priorities for rare diseases in Ireland
por: Somanadhan, Suja, et al.
Publicado: (2020)

Raindrops, Hailstones and Snowflakes
Publicado: (1881)

High concordance between Illumina HiSeq2500 and NextSeq500 for reduced representation bisulfite sequencing (RRBS)
por: Yin, Danqing, et al.
Publicado: (2016)

BS-Seeker3: ultrafast pipeline for bisulfite sequencing
por: Huang, Kevin Yu Yuan, et al.
Publicado: (2018)

VAliBS: a visual aligner for bisulfite sequences
por: Li, Min, et al.
Publicado: (2017)

oxBS-450K: A method for analysing hydroxymethylation using 450K BeadChips
por: Stewart, Sabrina K., et al.
Publicado: (2015)

Bioaerosol generation by raindrops on soil
por: Joung, Young Soo, et al.
Publicado: (2017)

Using high-density DNA methylation arrays to profile copy number alterations
por: Feber, Andrew, et al.
Publicado: (2014)

Accurate Measurement of 5-Methylcytosine and 5-Hydroxymethylcytosine in Human Cerebellum DNA by Oxidative Bisulfite on an Array (OxBS-Array)
por: Field, Sarah F., et al.
Publicado: (2015)

Raindrops keep falling on my LEP
Publicado: (1994)

Measurement on physical parameters of raindrop energy
por: Guo, Minghang, et al.
Publicado: (2013)

Comments on: Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed paraffin-embedded paired tumor and normal tissue
por: Thirlwell, Christina, et al.
Publicado: (2012)

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
por: Guo, Weilong, et al.
Publicado: (2013)

Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing
por: Giehr, Pascal, et al.
Publicado: (2018)

BS-virus-finder: virus integration calling using bisulfite sequencing data
por: Gao, Shengjie, et al.
Publicado: (2017)

Clue to the cause of portal hypertension: Look at the raindrops
por: Mishra, Shubhra, et al.
Publicado: (2019)

ViewBS: a powerful toolkit for visualization of high-throughput bisulfite sequencing data
por: Huang, Xiaosan, et al.
Publicado: (2018)

Statistical methods for classification of 5hmC levels based on the Illumina Inifinium HumanMethylation450 (450k) array data, under the paired bisulfite (BS) and oxidative bisulfite (oxBS) treatment
por: Slynko, Alla, et al.
Publicado: (2019)

Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics
por: Guilhamon, Paul, et al.
Publicado: (2014)

Mushrooms as Rainmakers: How Spores Act as Nuclei for Raindrops
por: Hassett, Maribeth O., et al.
Publicado: (2015)

How a raindrop gets shattered on biological surfaces
por: Kim, Seungho, et al.
Publicado: (2020)

Development of a Novel Piezoelectric Harvester Excited by Raindrops
por: Doria, Alberto, et al.
Publicado: (2019)

Measurement of Underwater Acoustic Energy Radiated by Single Raindrops
por: Liu, Shu, et al.
Publicado: (2021)

Improving Radar Rainfall Estimations with Scaled Raindrop Size Spectra in Mei-Yu Frontal Rainstorms
por: Zheng, Hepeng, et al.
Publicado: (2020)

Multi-Scale Shape Adaptive Network for Raindrop Detection and Removal from a Single Image
por: Luo, Hao, et al.
Publicado: (2020)

SEBORRHEIC KERATOSES IN FIVE ELDERLY PATIENTS: AN APPEARANCE OF RAINDROPS AND STREAMS
por: Zhang, Ru-zhi, et al.
Publicado: (2011)

Vortex-induced dispersal of a plant pathogen by raindrop impact
por: Kim, Seungho, et al.
Publicado: (2019)

A Review of Detection and Removal of Raindrops in Automotive Vision Systems
por: Hamzeh, Yazan, et al.
Publicado: (2021)

On the Use of Dynamic Calibration to Correct Drop Counter Rain Gauge Measurements
por: Stagnaro, Mattia, et al.
Publicado: (2021)

The availability of water associated with glycogen during dehydration: a reservoir or raindrop?
por: King, Roderick F. G. J., et al.
Publicado: (2017)

Raindrop or Tadpole Seborrheic Keratoses: A Lesser-Known Morphological Variant
por: Verma, Shyam, et al.
Publicado: (2023)

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses
por: Rubio-Camarillo, Miriam, et al.
Publicado: (2013)

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
por: Krueger, Felix, et al.
Publicado: (2011)

Epigenetic dysregulation and poorer prognosis in DAXX-deficient pancreatic neuroendocrine tumours
por: Pipinikas, Christodoulos P, et al.
Publicado: (2015)

Resource allocation in NHS dentistry: recognition of societal preferences (RAINDROP): study protocol
por: Vernazza, Christopher R., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_jthj9ae817q0dpe91a4ogoqeig