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A Fixed-Charge Model for Alcohol Polarization in the Condensed Phase, and Its Role in Small Molecule Hydration
[Image: see text] We present a simple optimization strategy for incorporating experimental dielectric response information on neat liquids in classical molecular models of alcohol. Using this strategy, we determine simple and transferable hydroxyl modulation rules that, when applied to an existing m...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4064691/ https://www.ncbi.nlm.nih.gov/pubmed/24702668 http://dx.doi.org/10.1021/jp411529h |
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author | Fennell, Christopher J. Wymer, Karisa L. Mobley, David L. |
author_facet | Fennell, Christopher J. Wymer, Karisa L. Mobley, David L. |
author_sort | Fennell, Christopher J. |
collection | PubMed |
description | [Image: see text] We present a simple optimization strategy for incorporating experimental dielectric response information on neat liquids in classical molecular models of alcohol. Using this strategy, we determine simple and transferable hydroxyl modulation rules that, when applied to an existing molecular parameter set, result in a newly dielectric corrected (DC) parameter set. We applied these rules to the general Amber force field (GAFF) to form an initial set of GAFF-DC parameters, and we found this to lead to significant improvement in the calculated dielectric constant and hydration free energy values for a wide variety of small molecule alcohol models. Tests of the GAFF-DC parameters in the SAMPL4 blind prediction event for hydration show these changes improve agreement with experiment. Surprisingly, these simple modifications also outperform detailed quantum mechanical electric field calculations using a self-consistent reaction field environment coupling term. This work provides a potential benchmark for future developments in methods for representing condensed-phase environments in electronic structure calculations. |
format | Online Article Text |
id | pubmed-4064691 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-40646912015-04-05 A Fixed-Charge Model for Alcohol Polarization in the Condensed Phase, and Its Role in Small Molecule Hydration Fennell, Christopher J. Wymer, Karisa L. Mobley, David L. J Phys Chem B [Image: see text] We present a simple optimization strategy for incorporating experimental dielectric response information on neat liquids in classical molecular models of alcohol. Using this strategy, we determine simple and transferable hydroxyl modulation rules that, when applied to an existing molecular parameter set, result in a newly dielectric corrected (DC) parameter set. We applied these rules to the general Amber force field (GAFF) to form an initial set of GAFF-DC parameters, and we found this to lead to significant improvement in the calculated dielectric constant and hydration free energy values for a wide variety of small molecule alcohol models. Tests of the GAFF-DC parameters in the SAMPL4 blind prediction event for hydration show these changes improve agreement with experiment. Surprisingly, these simple modifications also outperform detailed quantum mechanical electric field calculations using a self-consistent reaction field environment coupling term. This work provides a potential benchmark for future developments in methods for representing condensed-phase environments in electronic structure calculations. American Chemical Society 2014-04-05 2014-06-19 /pmc/articles/PMC4064691/ /pubmed/24702668 http://dx.doi.org/10.1021/jp411529h Text en Copyright © 2014 American Chemical Society Open Access on 04/05/2015 |
spellingShingle | Fennell, Christopher J. Wymer, Karisa L. Mobley, David L. A Fixed-Charge Model for Alcohol Polarization in the Condensed Phase, and Its Role in Small Molecule Hydration |
title | A Fixed-Charge Model for Alcohol
Polarization in the
Condensed Phase, and Its Role in Small Molecule Hydration |
title_full | A Fixed-Charge Model for Alcohol
Polarization in the
Condensed Phase, and Its Role in Small Molecule Hydration |
title_fullStr | A Fixed-Charge Model for Alcohol
Polarization in the
Condensed Phase, and Its Role in Small Molecule Hydration |
title_full_unstemmed | A Fixed-Charge Model for Alcohol
Polarization in the
Condensed Phase, and Its Role in Small Molecule Hydration |
title_short | A Fixed-Charge Model for Alcohol
Polarization in the
Condensed Phase, and Its Role in Small Molecule Hydration |
title_sort | fixed-charge model for alcohol
polarization in the
condensed phase, and its role in small molecule hydration |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4064691/ https://www.ncbi.nlm.nih.gov/pubmed/24702668 http://dx.doi.org/10.1021/jp411529h |
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