Cargando…

A sequence-based approach for prediction of CsrA/RsmA targets in bacteria with experimental validation in Pseudomonas aeruginosa

CsrA/RsmA homologs are an extensive family of ribonucleic acid (RNA)-binding proteins that function as global post-transcriptional regulators controlling important cellular processes such as secondary metabolism, motility, biofilm formation and the production and secretion of virulence factors in di...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kulkarni, Prajna R., Jia, Tao, Kuehne, Sarah A., Kerkering, Thomas M., Morris, Elizabeth R., Searle, Mark S., Heeb, Stephan, Rao, Jayasimha, Kulkarni, Rahul V.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	Computational Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066749/ https://www.ncbi.nlm.nih.gov/pubmed/24782516 http://dx.doi.org/10.1093/nar/gku309

Ejemplares similares

Structural Rearrangement in an RsmA/CsrA Ortholog of Pseudomonas aeruginosa Creates a Dimeric RNA-Binding Protein, RsmN
por: Morris, Elizabeth R., et al.
Publicado: (2013)

Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach
por: Fakhry, Carl Tony, et al.
Publicado: (2017)

The Pseudomonas putida CsrA/RsmA homologues negatively affect c‐di‐GMP pools and biofilm formation through the GGDEF/EAL response regulator CfcR
por: Huertas‐Rosales, Óscar, et al.
Publicado: (2017)

Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri
por: Kulkarni, Prajna R., et al.
Publicado: (2006)

RsmW, Pseudomonas aeruginosa small non-coding RsmA-binding RNA upregulated in biofilm versus planktonic growth conditions
por: Miller, Christine L., et al.
Publicado: (2016)

The Post-transcriptional Regulator rsmA/csrA Activates T3SS by Stabilizing the 5′ UTR of hrpG, the Master Regulator of hrp/hrc Genes, in Xanthomonas
por: Andrade, Maxuel O., et al.
Publicado: (2014)

Hfq-Assisted RsmA Regulation Is Central to Pseudomonas aeruginosa Biofilm Polysaccharide PEL Expression
por: Irie, Yasuhiko, et al.
Publicado: (2020)

Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA
por: Irie, Yasuhiko, et al.
Publicado: (2010)

Pleiotropic effects of RsmA and RsmE proteins in Pseudomonas fluorescens 2P24
por: Zhang, Yang, et al.
Publicado: (2020)

Regulatory Effects of CsrA in Vibrio cholerae
por: Butz, Heidi A., et al.
Publicado: (2021)

The phzA2-G2 Transcript Exhibits Direct RsmA-Mediated Activation in Pseudomonas aeruginosa M18
por: Ren, Bin, et al.
Publicado: (2014)

Binding of Campylobacter jejuni FliW Adjacent to the CsrA RNA-Binding Pockets Modulates CsrA Regulatory Activity
por: Bogacz, Marek, et al.
Publicado: (2021)

SiaA/D Interconnects c-di-GMP and RsmA Signaling to Coordinate Cellular Aggregation of Pseudomonas aeruginosa in Response to Environmental Conditions
por: Colley, Brendan, et al.
Publicado: (2016)

Campylobacter jejuni CsrA complements an Escherichia coli csrA mutation for the regulation of biofilm formation, motility and cellular morphology but not glycogen accumulation
por: Fields, Joshua A, et al.
Publicado: (2012)

Comparative Genomics and Evolutionary Analysis of RNA-Binding Proteins of the CsrA Family in the Genus Pseudomonas
por: Sobrero, Patricio Martín, et al.
Publicado: (2020)

Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins
por: Vakulskas, Christopher A., et al.
Publicado: (2016)

csrR, a Paralog and Direct Target of CsrA, Promotes Legionella pneumophila Resilience in Water
por: Abbott, Zachary D., et al.
Publicado: (2015)

CsrA maximizes expression of the AcrAB multidrug resistance transporter
por: Ricci, Vito, et al.
Publicado: (2017)

RNA Binding by the Campylobacter jejuni Post-transcriptional Regulator CsrA
por: El Abbar, Faiha M., et al.
Publicado: (2019)

Vibrio cholerae CsrA Directly Regulates varA To Increase Expression of the Three Nonredundant Csr Small RNAs
por: Butz, Heidi A., et al.
Publicado: (2019)

CsrA Shows Selective Regulation of sRNA-mRNA Networks
por: Rojano-Nisimura, Alejandra Matsuri, et al.
Publicado: (2023)

Genome-wide mapping of the RNA targets of the Pseudomonas aeruginosa riboregulatory protein RsmN
por: Romero, Manuel, et al.
Publicado: (2018)

2606. A Divergent Ferrichrome Receptor Associated with an Insertional Element (IS3) Identified on Novel Locus in Clinical Strain of Pseudomonas aeruginosa
por: Adenikinju, Adenike, et al.
Publicado: (2019)

Examination of Csr regulatory circuitry using epistasis analysis with RNA-seq (Epi-seq) confirms that CsrD affects gene expression via CsrA, CsrB and CsrC
por: Potts, Anastasia H., et al.
Publicado: (2018)

RovM and CsrA Negatively Regulate Urease Expression in Yersinia pseudotuberculosis
por: Dai, Qingyun, et al.
Publicado: (2018)

Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli
por: Pourciau, Christine, et al.
Publicado: (2019)

Diverse Mechanisms and Circuitry for Global Regulation by the RNA-Binding Protein CsrA
por: Pourciau, Christine, et al.
Publicado: (2020)

CsrA-Mediated Translational Activation of ymdA Expression in Escherichia coli
por: Renda, Andrew, et al.
Publicado: (2020)

Investigating the role of the carbon storage regulator A (CsrA) in Leptospira spp.
por: Phoka, Theerapat, et al.
Publicado: (2021)

The RsmA RNA-Binding Proteins in Pseudomonas syringae Exhibit Distinct and Overlapping Roles in Modulating Virulence and Survival Under Different Nutritional Conditions
por: Liu, Jun, et al.
Publicado: (2021)

Complete Genome Sequence of Pseudomonas aeruginosa CMC-115, a Clinical Strain from an Acute Ventilator-Associated Pneumonia Patient
por: Adenikinju, Adenike, et al.
Publicado: (2020)

Lack of RsmA-Mediated Control Results in Constant Hypervirulence, Cell Elongation, and Hyperflagellation in Pectobacterium wasabiae
por: Kõiv, Viia, et al.
Publicado: (2013)

CsrA impacts survival of Yersinia enterocolitica by affecting a myriad of physiological activities
por: LeGrand, Karen, et al.
Publicado: (2015)

Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics
por: Potts, Anastasia H., et al.
Publicado: (2017)

CsrA Regulates Swarming Motility and Carbohydrate and Amino Acid Metabolism in Vibrio alginolyticus
por: Liu, Bing, et al.
Publicado: (2021)

The VarA-CsrA regulatory pathway influences cell shape in Vibrio cholerae
por: Lemos Rocha, Leonardo F., et al.
Publicado: (2022)

Campylobacter jejuni CsrA Regulates Metabolic and Virulence Associated Proteins and Is Necessary for Mouse Colonization
por: Fields, Joshua A., et al.
Publicado: (2016)

Correction: Lack of RsmA-Mediated Control Results in Constant Hypervirulence, Cell Elongation, and Hyperflagellation in Pectobacterium wasabiae
por: Kõiv, Viia, et al.
Publicado: (2013)

Vibrio cholerae CsrA Regulates ToxR Levels in Response to Amino Acids and Is Essential for Virulence
por: Mey, Alexandra R., et al.
Publicado: (2015)

Robust Stoichiometry of FliW-CsrA Governs Flagellin Homeostasis and Cytoplasmic Organization in Bacillus subtilis
por: Oshiro, R. T., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_3o8tvrg7269uar4pei09tck5d1