Cargando…

MiningABs: mining associated biomarkers across multi-connected gene expression datasets

BACKGROUND: Human disease often arises as a consequence of alterations in a set of associated genes rather than alterations to a set of unassociated individual genes. Most previous microarray-based meta-analyses identified disease-associated genes or biomarkers independent of genetic interactions. T...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cheng, Chun-Pei, DeBoever, Christopher, Frazer, Kelly A, Liu, Yu-Cheng, Tseng, Vincent S
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4068973/ https://www.ncbi.nlm.nih.gov/pubmed/24909518 http://dx.doi.org/10.1186/1471-2105-15-173

Ejemplares similares

Mining differential top-k co-expression patterns from time course comparative gene expression datasets
por: Liu, Yu-Cheng, et al.
Publicado: (2013)

Data mining of plasma peptide chromatograms for biomarkers of air contaminant exposures
por: Karthikeyan, Subramanian, et al.
Publicado: (2008)

EpiMINE, a computational program for mining epigenomic data
por: Jammula, SriGanesh, et al.
Publicado: (2016)

A framework for generalized subspace pattern mining in high-dimensional datasets
por: Curry, Edward WJ
Publicado: (2014)

Gene prioritization and clustering by multi-view text mining
por: Yu, Shi, et al.
Publicado: (2010)

An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets
por: Cheng, Chun-Pei, et al.
Publicado: (2013)

Human polyomaviruses identification by logic mining techniques
por: Weitschek, Emanuel, et al.
Publicado: (2012)

Motif mining based on network space compression
por: Zhang, Qiang, et al.
Publicado: (2014)

EnvMine: A text-mining system for the automatic extraction of contextual information
por: Tamames, Javier, et al.
Publicado: (2010)

Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development
por: Turenne, Nicolas, et al.
Publicado: (2012)

Mining of massive datasets
por: Rajaraman, Anand, et al.
Publicado: (2011)

A New Method for Motif Mining in Biological Networks
por: Xu, Yuan, et al.
Publicado: (2014)

On the use of data mining for estimating carbon storage in the trees
por: Sanquetta, Carlos Roberto, et al.
Publicado: (2013)

Mining morphometrics and age from past survey photographs
por: Black, Caitlin E., et al.
Publicado: (2019)

MINE: Module Identification in Networks
por: Rhrissorrakrai, Kahn, et al.
Publicado: (2011)

The non-negative matrix factorization toolbox for biological data mining
por: Li, Yifeng, et al.
Publicado: (2013)

SWIFT-Review: a text-mining workbench for systematic review
por: Howard, Brian E., et al.
Publicado: (2016)

Mining, analyzing, and integrating viral signals from metagenomic data
por: Zheng, Tingting, et al.
Publicado: (2019)

Multiple comparisons permutation test for image based data mining in radiotherapy
por: Chen, Chun, et al.
Publicado: (2013)

Fast rule-based bioactivity prediction using associative classification mining
por: Yu, Pulan, et al.
Publicado: (2012)

Correlates of physical activity behavior in adults: a data mining approach
por: Farrahi, Vahid, et al.
Publicado: (2020)

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions
por: Puurand, Tarmo, et al.
Publicado: (2019)

Data mining of enzymes using specific peptides
por: Weingart, Uri, et al.
Publicado: (2009)

Mining influential genes based on deep learning
por: Kong, Lingpeng, et al.
Publicado: (2021)

SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
por: Sengupta, Dipankar, et al.
Publicado: (2013)

An open source software for fast grid-based data-mining in spatial epidemiology (FGBASE)
por: Baker, David M, et al.
Publicado: (2014)

Unravelling associations between unassigned mass spectrometry peaks with frequent itemset mining techniques
por: Vu, Trung Nghia, et al.
Publicado: (2014)

Applying negative rule mining to improve genome annotation
por: Artamonova, Irena I, et al.
Publicado: (2007)

Mining for class-specific motifs in protein sequence classification
por: Srinivasan, Satish M, et al.
Publicado: (2013)

Fungal artificial chromosomes for mining of the fungal secondary metabolome
por: Bok, Jin Woo, et al.
Publicado: (2015)

Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles
por: Ma, Qicheng, et al.
Publicado: (2008)

Epidemiological geomatics in evaluation of mine risk education in Afghanistan: introducing population weighted raster maps
por: Andersson, Neil, et al.
Publicado: (2006)

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
por: Adler, Priit, et al.
Publicado: (2009)

Microarray data mining using landmark gene-guided clustering
por: Chopra, Pankaj, et al.
Publicado: (2008)

Improving classification in protein structure databases using text mining
por: Koussounadis, Antonis, et al.
Publicado: (2009)

Mining pathway associations for disease-related pathway activity analysis based on gene expression and methylation data
por: Lee, Hyeonjeong, et al.
Publicado: (2017)

InvBFM: finding genomic inversions from high-throughput sequence data based on feature mining
por: Wu, Zhongjia, et al.
Publicado: (2020)

Aligning text mining and machine learning algorithms with best practices for study selection in systematic literature reviews
por: Popoff, E., et al.
Publicado: (2020)

Data Mining of Microarray Datasets in Translational Neuroscience
por: O’Connor, Lance M., et al.
Publicado: (2023)

MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile
por: Van Camp, Pieter-Jan, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_5g560pv3jco92p01fcnkjmj0vf