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Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
This paper describes how DISCO, the data aggregator that supports the Neuroscience Information Framework (NIF), has been extended to play a central role in automating the complex workflow required to support and coordinate the NIF’s data integration capabilities. The NIF is an NIH Neuroscience Bluep...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071641/ https://www.ncbi.nlm.nih.gov/pubmed/25018728 http://dx.doi.org/10.3389/fninf.2014.00058 |
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author | Marenco, Luis N. Wang, Rixin Bandrowski, Anita E. Grethe, Jeffrey S. Shepherd, Gordon M. Miller, Perry L. |
author_facet | Marenco, Luis N. Wang, Rixin Bandrowski, Anita E. Grethe, Jeffrey S. Shepherd, Gordon M. Miller, Perry L. |
author_sort | Marenco, Luis N. |
collection | PubMed |
description | This paper describes how DISCO, the data aggregator that supports the Neuroscience Information Framework (NIF), has been extended to play a central role in automating the complex workflow required to support and coordinate the NIF’s data integration capabilities. The NIF is an NIH Neuroscience Blueprint initiative designed to help researchers access the wealth of data related to the neurosciences available via the Internet. A central component is the NIF Federation, a searchable database that currently contains data from 231 data and information resources regularly harvested, updated, and warehoused in the DISCO system. In the past several years, DISCO has greatly extended its functionality and has evolved to play a central role in automating the complex, ongoing process of harvesting, validating, integrating, and displaying neuroscience data from a growing set of participating resources. This paper provides an overview of DISCO’s current capabilities and discusses a number of the challenges and future directions related to the process of coordinating the integration of neuroscience data within the NIF Federation. |
format | Online Article Text |
id | pubmed-4071641 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-40716412014-07-11 Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources Marenco, Luis N. Wang, Rixin Bandrowski, Anita E. Grethe, Jeffrey S. Shepherd, Gordon M. Miller, Perry L. Front Neuroinform Neuroscience This paper describes how DISCO, the data aggregator that supports the Neuroscience Information Framework (NIF), has been extended to play a central role in automating the complex workflow required to support and coordinate the NIF’s data integration capabilities. The NIF is an NIH Neuroscience Blueprint initiative designed to help researchers access the wealth of data related to the neurosciences available via the Internet. A central component is the NIF Federation, a searchable database that currently contains data from 231 data and information resources regularly harvested, updated, and warehoused in the DISCO system. In the past several years, DISCO has greatly extended its functionality and has evolved to play a central role in automating the complex, ongoing process of harvesting, validating, integrating, and displaying neuroscience data from a growing set of participating resources. This paper provides an overview of DISCO’s current capabilities and discusses a number of the challenges and future directions related to the process of coordinating the integration of neuroscience data within the NIF Federation. Frontiers Media S.A. 2014-05-28 /pmc/articles/PMC4071641/ /pubmed/25018728 http://dx.doi.org/10.3389/fninf.2014.00058 Text en Copyright © 2014 Marenco, Wang, Bandrowski, Grethe, Shepherd and Miller. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Marenco, Luis N. Wang, Rixin Bandrowski, Anita E. Grethe, Jeffrey S. Shepherd, Gordon M. Miller, Perry L. Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources |
title | Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources |
title_full | Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources |
title_fullStr | Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources |
title_full_unstemmed | Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources |
title_short | Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources |
title_sort | extending the nif disco framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071641/ https://www.ncbi.nlm.nih.gov/pubmed/25018728 http://dx.doi.org/10.3389/fninf.2014.00058 |
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