Cargando…

Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources

This paper describes how DISCO, the data aggregator that supports the Neuroscience Information Framework (NIF), has been extended to play a central role in automating the complex workflow required to support and coordinate the NIF’s data integration capabilities. The NIF is an NIH Neuroscience Bluep...

Descripción completa

Detalles Bibliográficos
Autores principales: Marenco, Luis N., Wang, Rixin, Bandrowski, Anita E., Grethe, Jeffrey S., Shepherd, Gordon M., Miller, Perry L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071641/
https://www.ncbi.nlm.nih.gov/pubmed/25018728
http://dx.doi.org/10.3389/fninf.2014.00058
_version_ 1782322826582163456
author Marenco, Luis N.
Wang, Rixin
Bandrowski, Anita E.
Grethe, Jeffrey S.
Shepherd, Gordon M.
Miller, Perry L.
author_facet Marenco, Luis N.
Wang, Rixin
Bandrowski, Anita E.
Grethe, Jeffrey S.
Shepherd, Gordon M.
Miller, Perry L.
author_sort Marenco, Luis N.
collection PubMed
description This paper describes how DISCO, the data aggregator that supports the Neuroscience Information Framework (NIF), has been extended to play a central role in automating the complex workflow required to support and coordinate the NIF’s data integration capabilities. The NIF is an NIH Neuroscience Blueprint initiative designed to help researchers access the wealth of data related to the neurosciences available via the Internet. A central component is the NIF Federation, a searchable database that currently contains data from 231 data and information resources regularly harvested, updated, and warehoused in the DISCO system. In the past several years, DISCO has greatly extended its functionality and has evolved to play a central role in automating the complex, ongoing process of harvesting, validating, integrating, and displaying neuroscience data from a growing set of participating resources. This paper provides an overview of DISCO’s current capabilities and discusses a number of the challenges and future directions related to the process of coordinating the integration of neuroscience data within the NIF Federation.
format Online
Article
Text
id pubmed-4071641
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-40716412014-07-11 Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources Marenco, Luis N. Wang, Rixin Bandrowski, Anita E. Grethe, Jeffrey S. Shepherd, Gordon M. Miller, Perry L. Front Neuroinform Neuroscience This paper describes how DISCO, the data aggregator that supports the Neuroscience Information Framework (NIF), has been extended to play a central role in automating the complex workflow required to support and coordinate the NIF’s data integration capabilities. The NIF is an NIH Neuroscience Blueprint initiative designed to help researchers access the wealth of data related to the neurosciences available via the Internet. A central component is the NIF Federation, a searchable database that currently contains data from 231 data and information resources regularly harvested, updated, and warehoused in the DISCO system. In the past several years, DISCO has greatly extended its functionality and has evolved to play a central role in automating the complex, ongoing process of harvesting, validating, integrating, and displaying neuroscience data from a growing set of participating resources. This paper provides an overview of DISCO’s current capabilities and discusses a number of the challenges and future directions related to the process of coordinating the integration of neuroscience data within the NIF Federation. Frontiers Media S.A. 2014-05-28 /pmc/articles/PMC4071641/ /pubmed/25018728 http://dx.doi.org/10.3389/fninf.2014.00058 Text en Copyright © 2014 Marenco, Wang, Bandrowski, Grethe, Shepherd and Miller. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Marenco, Luis N.
Wang, Rixin
Bandrowski, Anita E.
Grethe, Jeffrey S.
Shepherd, Gordon M.
Miller, Perry L.
Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
title Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
title_full Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
title_fullStr Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
title_full_unstemmed Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
title_short Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
title_sort extending the nif disco framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071641/
https://www.ncbi.nlm.nih.gov/pubmed/25018728
http://dx.doi.org/10.3389/fninf.2014.00058
work_keys_str_mv AT marencoluisn extendingthenifdiscoframeworktoautomatecomplexworkflowcoordinatingtheharvestandintegrationofdatafromdiverseneuroscienceinformationresources
AT wangrixin extendingthenifdiscoframeworktoautomatecomplexworkflowcoordinatingtheharvestandintegrationofdatafromdiverseneuroscienceinformationresources
AT bandrowskianitae extendingthenifdiscoframeworktoautomatecomplexworkflowcoordinatingtheharvestandintegrationofdatafromdiverseneuroscienceinformationresources
AT grethejeffreys extendingthenifdiscoframeworktoautomatecomplexworkflowcoordinatingtheharvestandintegrationofdatafromdiverseneuroscienceinformationresources
AT shepherdgordonm extendingthenifdiscoframeworktoautomatecomplexworkflowcoordinatingtheharvestandintegrationofdatafromdiverseneuroscienceinformationresources
AT millerperryl extendingthenifdiscoframeworktoautomatecomplexworkflowcoordinatingtheharvestandintegrationofdatafromdiverseneuroscienceinformationresources