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Intermediate electrostatic field for the elongation method
A simple way to improve the accuracy of the fragmentation methods is proposed. The formalism was applied to the elongation (ELG) method at restricted open-shell Hartree-Fock (ROHF) level of theory. The α-helix conformer of polyglycine was taken as a model system. The modified ELG method includes a s...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4072069/ https://www.ncbi.nlm.nih.gov/pubmed/24878802 http://dx.doi.org/10.1007/s00894-014-2277-6 |
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author | Kuźniarowicz, Piotr Liu, Kai Aoki, Yuriko Gu, Feng Long Stachowicz, Anna Korchowiec, Jacek |
author_facet | Kuźniarowicz, Piotr Liu, Kai Aoki, Yuriko Gu, Feng Long Stachowicz, Anna Korchowiec, Jacek |
author_sort | Kuźniarowicz, Piotr |
collection | PubMed |
description | A simple way to improve the accuracy of the fragmentation methods is proposed. The formalism was applied to the elongation (ELG) method at restricted open-shell Hartree-Fock (ROHF) level of theory. The α-helix conformer of polyglycine was taken as a model system. The modified ELG method includes a simplified electrostatic field resulting from point-charge distribution of the system’s environment. In this way the long-distance polarization is approximately taken into account. The field attenuates during the ELG process to eventually disappear when the final structure is reached. The point-charge distributions for each ELG step are obtained from charge sensitivity analysis (CSA) in force-field atoms resolution. The presence of the intermediate field improves the accuracy of ELG calculations. The errors in total energy and its kinetic and potential contributions are reduced by at least one-order of magnitude. In addition the SCF convergence of ROHF scheme is improved. |
format | Online Article Text |
id | pubmed-4072069 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-40720692014-07-18 Intermediate electrostatic field for the elongation method Kuźniarowicz, Piotr Liu, Kai Aoki, Yuriko Gu, Feng Long Stachowicz, Anna Korchowiec, Jacek J Mol Model Original Paper A simple way to improve the accuracy of the fragmentation methods is proposed. The formalism was applied to the elongation (ELG) method at restricted open-shell Hartree-Fock (ROHF) level of theory. The α-helix conformer of polyglycine was taken as a model system. The modified ELG method includes a simplified electrostatic field resulting from point-charge distribution of the system’s environment. In this way the long-distance polarization is approximately taken into account. The field attenuates during the ELG process to eventually disappear when the final structure is reached. The point-charge distributions for each ELG step are obtained from charge sensitivity analysis (CSA) in force-field atoms resolution. The presence of the intermediate field improves the accuracy of ELG calculations. The errors in total energy and its kinetic and potential contributions are reduced by at least one-order of magnitude. In addition the SCF convergence of ROHF scheme is improved. Springer Berlin Heidelberg 2014-05-31 2014 /pmc/articles/PMC4072069/ /pubmed/24878802 http://dx.doi.org/10.1007/s00894-014-2277-6 Text en © The Author(s) 2014 https://creativecommons.org/licenses/by/4.0/ Open Access This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. |
spellingShingle | Original Paper Kuźniarowicz, Piotr Liu, Kai Aoki, Yuriko Gu, Feng Long Stachowicz, Anna Korchowiec, Jacek Intermediate electrostatic field for the elongation method |
title | Intermediate electrostatic field for the elongation method |
title_full | Intermediate electrostatic field for the elongation method |
title_fullStr | Intermediate electrostatic field for the elongation method |
title_full_unstemmed | Intermediate electrostatic field for the elongation method |
title_short | Intermediate electrostatic field for the elongation method |
title_sort | intermediate electrostatic field for the elongation method |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4072069/ https://www.ncbi.nlm.nih.gov/pubmed/24878802 http://dx.doi.org/10.1007/s00894-014-2277-6 |
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