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Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system

The analysis of complex DNA mixtures is challenging for forensic DNA testing. Accurate and sensitive methods for profiling these samples are urgently required. In this study, we developed 11 groups of mixed male DNA samples (n=297) with scientific validation of D-value [>95% of D-values ≤0.1 with...

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Autores principales: HU, NA, CONG, BIN, GAO, TAO, HU, RONG, CHEN, YI, TANG, HUI, XUE, LUYAN, LI, SHUJIN, MA, CHUNLING
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4072395/
https://www.ncbi.nlm.nih.gov/pubmed/24821391
http://dx.doi.org/10.3892/ijmm.2014.1779
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author HU, NA
CONG, BIN
GAO, TAO
HU, RONG
CHEN, YI
TANG, HUI
XUE, LUYAN
LI, SHUJIN
MA, CHUNLING
author_facet HU, NA
CONG, BIN
GAO, TAO
HU, RONG
CHEN, YI
TANG, HUI
XUE, LUYAN
LI, SHUJIN
MA, CHUNLING
author_sort HU, NA
collection PubMed
description The analysis of complex DNA mixtures is challenging for forensic DNA testing. Accurate and sensitive methods for profiling these samples are urgently required. In this study, we developed 11 groups of mixed male DNA samples (n=297) with scientific validation of D-value [>95% of D-values ≤0.1 with average peak height (APH) of the active alleles ≤2,500 rfu]. A strong linear correlation was detected between the peak height (PH) and peak area (PA) in the curve fit using the least squares method (P<2e-16). The Kruskal-Wallis rank-sum test revealed significant differences in the heterozygote balance ratio (H(b)) at 16 short tandem repeat (STR) loci (P=0.0063) and 9 mixed gradients (P=0.02257). Locally weighted regression fitting of APH and H(b) (inflection point at APH = 1,250 rfu) showed 92.74% of H(b) >0.6 with the APH ≥1,250. The variation of H(b) distribution in the different STR loci suggested the different forensic efficiencies of these loci. Allelic drop-out (ADO) correlated with the APH and mixed gradient. All ADOs had an APH of <1,000 rfu, and the number of ADO increased when the APH of mixed DNA profiles gradually decreased. These results strongly suggest that calibration parameters should be introduced to correct the deviation in the APH at each STR locus during the analysis of mixed DNA samples.
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spelling pubmed-40723952014-06-26 Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system HU, NA CONG, BIN GAO, TAO HU, RONG CHEN, YI TANG, HUI XUE, LUYAN LI, SHUJIN MA, CHUNLING Int J Mol Med Articles The analysis of complex DNA mixtures is challenging for forensic DNA testing. Accurate and sensitive methods for profiling these samples are urgently required. In this study, we developed 11 groups of mixed male DNA samples (n=297) with scientific validation of D-value [>95% of D-values ≤0.1 with average peak height (APH) of the active alleles ≤2,500 rfu]. A strong linear correlation was detected between the peak height (PH) and peak area (PA) in the curve fit using the least squares method (P<2e-16). The Kruskal-Wallis rank-sum test revealed significant differences in the heterozygote balance ratio (H(b)) at 16 short tandem repeat (STR) loci (P=0.0063) and 9 mixed gradients (P=0.02257). Locally weighted regression fitting of APH and H(b) (inflection point at APH = 1,250 rfu) showed 92.74% of H(b) >0.6 with the APH ≥1,250. The variation of H(b) distribution in the different STR loci suggested the different forensic efficiencies of these loci. Allelic drop-out (ADO) correlated with the APH and mixed gradient. All ADOs had an APH of <1,000 rfu, and the number of ADO increased when the APH of mixed DNA profiles gradually decreased. These results strongly suggest that calibration parameters should be introduced to correct the deviation in the APH at each STR locus during the analysis of mixed DNA samples. D.A. Spandidos 2014-07 2014-05-12 /pmc/articles/PMC4072395/ /pubmed/24821391 http://dx.doi.org/10.3892/ijmm.2014.1779 Text en Copyright © 2014, Spandidos Publications http://creativecommons.org/licenses/by/3.0 This is an open-access article licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License. The article may be redistributed, reproduced, and reused for non-commercial purposes, provided the original source is properly cited.
spellingShingle Articles
HU, NA
CONG, BIN
GAO, TAO
HU, RONG
CHEN, YI
TANG, HUI
XUE, LUYAN
LI, SHUJIN
MA, CHUNLING
Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system
title Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system
title_full Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system
title_fullStr Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system
title_full_unstemmed Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system
title_short Evaluation of parameters in mixed male DNA profiles for the Identifiler(®) multiplex system
title_sort evaluation of parameters in mixed male dna profiles for the identifiler(®) multiplex system
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4072395/
https://www.ncbi.nlm.nih.gov/pubmed/24821391
http://dx.doi.org/10.3892/ijmm.2014.1779
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