Cargando…

Nucleosome organization in the vicinity of transcription factor binding sites in the human genome

BACKGROUND: The binding of transcription factors (TFs) to specific DNA sequences is an initial and crucial step of transcription. In eukaryotes, this process is highly dependent on the local chromatin state, which can be modified by recruiting chromatin remodelers. However, previous studies have foc...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nie, Yumin, Cheng, Xiangfei, Chen, Jiao, Sun, Xiao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073502/ https://www.ncbi.nlm.nih.gov/pubmed/24942981 http://dx.doi.org/10.1186/1471-2164-15-493

Ejemplares similares

The Patterns of Histone Modifications in the Vicinity of Transcription Factor Binding Sites in Human Lymphoblastoid Cell Lines
por: Nie, Yumin, et al.
Publicado: (2013)

Promoter-proximal transcription factor binding is transcriptionally active when coupled with nucleosome repositioning in immediate vicinity
por: Yadav, Vinod Kumar, et al.
Publicado: (2014)

The nucleosome regulates the usage of polyadenylation sites in the human genome
por: Huang, Huan, et al.
Publicado: (2013)

Prediction of Nucleosome Positioning Based on Transcription Factor Binding Sites
por: Yi, Xianfu, et al.
Publicado: (2010)

Transcription Factor Binding Sites Prediction Based on Modified Nucleosomes
por: Talebzadeh, Mohammad, et al.
Publicado: (2014)

Low nucleosome occupancy is encoded around functional human transcription factor binding sites
por: Daenen, Floris, et al.
Publicado: (2008)

A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast
por: Narlikar, Leelavati, et al.
Publicado: (2007)

Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation
por: Dai, Zhiming, et al.
Publicado: (2009)

Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast
por: Swamy, Krishna BS, et al.
Publicado: (2011)

Transcription factor activity and nucleosome organization in mitosis
por: Festuccia, Nicola, et al.
Publicado: (2019)

Nucleosome binding by the pioneer transcription factor OCT4
por: Echigoya, Kenta, et al.
Publicado: (2020)

The organization of nucleosomes around splice sites
por: Chen, Wei, et al.
Publicado: (2010)

Nucleosome Organization around Pseudogenes in the Human Genome
por: Liu, Guoqing, et al.
Publicado: (2015)

Machine learning predicts nucleosome binding modes of transcription factors
por: Kishan, K. C., et al.
Publicado: (2021)

The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome
por: Fu, Yutao, et al.
Publicado: (2008)

Nucleosome Presence at AML-1 Binding Sites Inversely Correlates with Ly49 Expression: Revelations from an Informatics Analysis of Nucleosomes and Immune Cell Transcription Factors
por: Wight, Andrew, et al.
Publicado: (2016)

CENP-A nucleosomes localize to transcription factor hotspots and subtelomeric sites in human cancer cells
por: Athwal, Rajbir K, et al.
Publicado: (2015)

Inducible Nucleosome Depletion at OREBP-Binding-Sites by Hypertonic Stress
por: Tong, Edith H. Y., et al.
Publicado: (2009)

Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding
por: He, Ximiao, et al.
Publicado: (2013)

NDF, a nucleosome-destabilizing factor that facilitates transcription through nucleosomes
por: Fei, Jia, et al.
Publicado: (2018)

Structural Features of the Nucleosomal DNA Modulate the Functional Binding of a Transcription Factor and Productive Transcription
por: Vinayachandran, Vinesh, et al.
Publicado: (2022)

Quantitative Test of the Barrier Nucleosome Model for Statistical Positioning of Nucleosomes Up- and Downstream of Transcription Start Sites
por: Möbius, Wolfram, et al.
Publicado: (2010)

H3K27ac nucleosomes facilitate HMGN localization at regulatory sites to modulate chromatin binding of transcription factors
por: Zhang, Shaofei, et al.
Publicado: (2022)

Nucleosomes accelerate transcription factor dissociation
por: Luo, Yi, et al.
Publicado: (2014)

CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning
por: Oomen, Marlies E., et al.
Publicado: (2019)

Mutations and Binding Sites of Human Transcription Factors
por: Kamanu, Frederick Kinyua, et al.
Publicado: (2012)

Characterization of Mosquito Breeding Sites in and in the Vicinity of Tigray Microdams
por: Dejenie, Tadesse, et al.
Publicado: (2011)

The MuvB complex binds and stabilizes nucleosomes downstream of the transcription start site of cell-cycle dependent genes
por: Asthana, Anushweta, et al.
Publicado: (2022)

Transcription Factor Binding Sites Are Genetic Determinants of Retroviral Integration in the Human Genome
por: Felice, Barbara, et al.
Publicado: (2009)

Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites
por: Blanchette, Mathieu
Publicado: (2012)

Altered Nucleosome Positioning at the Transcription Start Site and Deficient Transcriptional Initiation in Friedreich Ataxia
por: Chutake, Yogesh K., et al.
Publicado: (2014)

The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription
por: Hildreth, A Elizabeth, et al.
Publicado: (2020)

Nucleosomes, transcription, and probability
por: Boeger, Hinrich
Publicado: (2014)

Dynamic regulation of transcription factors by nucleosome remodeling
por: Li, Ming, et al.
Publicado: (2015)

The interaction landscape between transcription factors and the nucleosome
por: Zhu, Fangjie, et al.
Publicado: (2018)

Positional distribution of human transcription factor binding sites
por: Koudritsky, Mark, et al.
Publicado: (2008)

Identification of Candidate Transcription Factor Binding Sites in the Cattle Genome
por: Bickhart, Derek M., et al.
Publicado: (2013)

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome
por: Dresch, Jacqueline M., et al.
Publicado: (2016)

Ab initio identification of putative human transcription factor binding sites by comparative genomics
por: Corà, D, et al.
Publicado: (2005)

Most transcription factor binding sites are in a few mosaic classes of the human genome
por: Evans, Kenneth J
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_na5c09m47pmpa68rb7u60jp0qj