Cargando…

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing

BACKGROUND: The advent of large-scale gene expression technologies has helped to reveal in eukaryotic cells, the existence of thousands of non-coding transcripts, whose function and significance remain mostly poorly understood. Among these non-coding transcripts, long non-coding RNAs (lncRNAs) are t...

Descripción completa

Detalles Bibliográficos
Autores principales:	Billerey, Coline, Boussaha, Mekki, Esquerré, Diane, Rebours, Emmanuelle, Djari, Anis, Meersseman, Cédric, Klopp, Christophe, Gautheret, Daniel, Rocha, Dominique
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073507/ https://www.ncbi.nlm.nih.gov/pubmed/24948191 http://dx.doi.org/10.1186/1471-2164-15-499

Ejemplares similares

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing
por: Djari, Anis, et al.
Publicado: (2013)

Genetic variability of the activity of bidirectional promoters: a pilot study in bovine muscle
por: Meersseman, Cédric, et al.
Publicado: (2017)

Identification of copy number variation in French dairy and beef breeds using next-generation sequencing
por: Letaief, Rabia, et al.
Publicado: (2017)

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds
por: Boussaha, Mekki, et al.
Publicado: (2015)

Detection of Haplotypes Associated with Prenatal Death in Dairy Cattle and Identification of Deleterious Mutations in GART, SHBG and SLC37A2
por: Fritz, Sébastien, et al.
Publicado: (2013)

Survey of allele specific expression in bovine muscle
por: Guillocheau, Gabriel M., et al.
Publicado: (2019)

Linkage disequilibrium and past effective population size in native Tunisian cattle
por: Jemaa, Slim Ben, et al.
Publicado: (2019)

Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout
por: Boussaha, Mekki, et al.
Publicado: (2012)

Re-Sequencing Data for Refining Candidate Genes and Polymorphisms in QTL Regions Affecting Adiposity in Chicken
por: Roux, Pierre-François, et al.
Publicado: (2014)

Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences
por: Boussaha, Mekki, et al.
Publicado: (2016)

Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates
por: Frésard, Laure, et al.
Publicado: (2015)

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies
por: Cabau, Cédric, et al.
Publicado: (2017)

Characterization of bovine FUT7 furthers understanding of FUT7 evolution in mammals
por: Laporte, Benoît, et al.
Publicado: (2012)

The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3
por: Roux, Pierre-François, et al.
Publicado: (2015)

Survey of mitochondrial sequences integrated into the bovine nuclear genome
por: Grau, Erwin Tramontin, et al.
Publicado: (2020)

Systematic identification of long intergenic non-coding RNAs expressed in bovine oocytes
por: Wang, Jian, et al.
Publicado: (2020)

Novel Insights into the Bovine Polled Phenotype and Horn Ontogenesis in Bovidae
por: Allais-Bonnet, Aurélie, et al.
Publicado: (2013)

RNAbrowse: RNA-Seq De Novo Assembly Results Browser
por: Mariette, Jérôme, et al.
Publicado: (2014)

An integrative method to normalize RNA-Seq data
por: Filloux, Cyril, et al.
Publicado: (2014)

Whole genome sequencing reveals signals of adaptive admixture in Creole cattle
por: Ben-Jemaa, Slim, et al.
Publicado: (2023)

Sequence-based GWAS and post-GWAS analyses reveal a key role of SLC37A1, ANKH, and regulatory regions on bovine milk mineral content
por: Sanchez, Marie-Pierre, et al.
Publicado: (2021)

Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis-eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposity Regulation
por: Roux, Pierre-François, et al.
Publicado: (2015)

Structure of the intergenic spacers in chicken ribosomal DNA
por: Dyomin, Alexander, et al.
Publicado: (2019)

Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches
por: Mobuchon, Lenha, et al.
Publicado: (2015)

Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands
por: Tong, Chao, et al.
Publicado: (2017)

Intergenic transcription in in vivo developed bovine oocytes and pre-implantation embryos
por: Ranjitkar, Saurav, et al.
Publicado: (2023)

Long Intergenic Non-protein Coding RNA 511 in Cancers
por: Wang, Xiao-Fei, et al.
Publicado: (2020)

Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology
por: van den Berg, Irene, et al.
Publicado: (2014)

Bovine ncRNAs Are Abundant, Primarily Intergenic, Conserved and Associated with Regulatory Genes
por: Qu, Zhipeng, et al.
Publicado: (2012)

IntergenicDB: a database for intergenic sequences
por: Notari, Daniel Luis, et al.
Publicado: (2014)

Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions
por: Deforges, Jules, et al.
Publicado: (2019)

RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
por: Hérault, Frédéric, et al.
Publicado: (2019)

Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes
por: Kannan, Sivakumar, et al.
Publicado: (2015)

Involvement of the long intergenic non-coding RNA LINC00461 in schizophrenia
por: Rao, Shuquan, et al.
Publicado: (2022)

Functional profiling of long intergenic non-coding RNAs in fission yeast
por: Rodriguez-Lopez, Maria, et al.
Publicado: (2022)

Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae
por: Palos, Kyle, et al.
Publicado: (2022)

Long Intergenic Non-Protein Coding RNA 173 in Human Cancers
por: Mao, Wei, et al.
Publicado: (2022)

Uncovering Pseudogenes and Intergenic Protein-coding Sequences in TriTryps’ Genomes
por: Abrahim, Mayla, et al.
Publicado: (2022)

Core Promoter Regions of Antisense and Long Intergenic Non-Coding RNAs
por: Savina, Ekaterina A., et al.
Publicado: (2023)

Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer
por: Bawa, Pushpinder, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_og1qe8e39up3nrvj7ubl6pvs86