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Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage
While initial phylogenetic analyses concluded to Guinea 2014 EBOV falling outside the Zaïre lineage (ZEBOV), a recent re-analysis of the same dataset by Dudas and Rambaut (2014) suggested that Guinea 2014 EBOV actually is ZEBOV. Under the same hypothesis as used by these authors (the molecular clock...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073806/ https://www.ncbi.nlm.nih.gov/pubmed/24987574 http://dx.doi.org/10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86 |
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author | Calvignac-Spencer, Sébastien Schulze, Jakob M. Zickmann, Franziska Renard, Bernhard Y. |
author_facet | Calvignac-Spencer, Sébastien Schulze, Jakob M. Zickmann, Franziska Renard, Bernhard Y. |
author_sort | Calvignac-Spencer, Sébastien |
collection | PubMed |
description | While initial phylogenetic analyses concluded to Guinea 2014 EBOV falling outside the Zaïre lineage (ZEBOV), a recent re-analysis of the same dataset by Dudas and Rambaut (2014) suggested that Guinea 2014 EBOV actually is ZEBOV. Under the same hypothesis as used by these authors (the molecular clock hypothesis), we reinforce their conclusion by providing a statistical assessment of the location of the root of the Zaïre lineage. Our analysis unambiguously supports Guinea 2014 EBOV as a member of the Zaïre lineage. In addition, we also show that some uncertainty exists so as to the location of the root of the genus Ebolavirus. We release the software we used for these re-analyses. RootAnnotator allows for the easy determination of branch root posterior probability from any posterior sample of clocked trees and is freely available at http://sourceforge.net/projects/rootannotator/. |
format | Online Article Text |
id | pubmed-4073806 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-40738062014-06-30 Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage Calvignac-Spencer, Sébastien Schulze, Jakob M. Zickmann, Franziska Renard, Bernhard Y. PLoS Curr Research While initial phylogenetic analyses concluded to Guinea 2014 EBOV falling outside the Zaïre lineage (ZEBOV), a recent re-analysis of the same dataset by Dudas and Rambaut (2014) suggested that Guinea 2014 EBOV actually is ZEBOV. Under the same hypothesis as used by these authors (the molecular clock hypothesis), we reinforce their conclusion by providing a statistical assessment of the location of the root of the Zaïre lineage. Our analysis unambiguously supports Guinea 2014 EBOV as a member of the Zaïre lineage. In addition, we also show that some uncertainty exists so as to the location of the root of the genus Ebolavirus. We release the software we used for these re-analyses. RootAnnotator allows for the easy determination of branch root posterior probability from any posterior sample of clocked trees and is freely available at http://sourceforge.net/projects/rootannotator/. Public Library of Science 2014-06-16 /pmc/articles/PMC4073806/ /pubmed/24987574 http://dx.doi.org/10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86 Text en http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Calvignac-Spencer, Sébastien Schulze, Jakob M. Zickmann, Franziska Renard, Bernhard Y. Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage |
title | Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage |
title_full | Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage |
title_fullStr | Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage |
title_full_unstemmed | Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage |
title_short | Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage |
title_sort | clock rooting further demonstrates that guinea 2014 ebov is a member of the zaïre lineage |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073806/ https://www.ncbi.nlm.nih.gov/pubmed/24987574 http://dx.doi.org/10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86 |
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