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Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage

While initial phylogenetic analyses concluded to Guinea 2014 EBOV falling outside the Zaïre lineage (ZEBOV), a recent re-analysis of the same dataset by Dudas and Rambaut (2014) suggested that Guinea 2014 EBOV actually is ZEBOV. Under the same hypothesis as used by these authors (the molecular clock...

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Autores principales: Calvignac-Spencer, Sébastien, Schulze, Jakob M., Zickmann, Franziska, Renard, Bernhard Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073806/
https://www.ncbi.nlm.nih.gov/pubmed/24987574
http://dx.doi.org/10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86
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author Calvignac-Spencer, Sébastien
Schulze, Jakob M.
Zickmann, Franziska
Renard, Bernhard Y.
author_facet Calvignac-Spencer, Sébastien
Schulze, Jakob M.
Zickmann, Franziska
Renard, Bernhard Y.
author_sort Calvignac-Spencer, Sébastien
collection PubMed
description While initial phylogenetic analyses concluded to Guinea 2014 EBOV falling outside the Zaïre lineage (ZEBOV), a recent re-analysis of the same dataset by Dudas and Rambaut (2014) suggested that Guinea 2014 EBOV actually is ZEBOV. Under the same hypothesis as used by these authors (the molecular clock hypothesis), we reinforce their conclusion by providing a statistical assessment of the location of the root of the Zaïre lineage. Our analysis unambiguously supports Guinea 2014 EBOV as a member of the Zaïre lineage. In addition, we also show that some uncertainty exists so as to the location of the root of the genus Ebolavirus. We release the software we used for these re-analyses. RootAnnotator allows for the easy determination of branch root posterior probability from any posterior sample of clocked trees and is freely available at http://sourceforge.net/projects/rootannotator/.
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spelling pubmed-40738062014-06-30 Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage Calvignac-Spencer, Sébastien Schulze, Jakob M. Zickmann, Franziska Renard, Bernhard Y. PLoS Curr Research While initial phylogenetic analyses concluded to Guinea 2014 EBOV falling outside the Zaïre lineage (ZEBOV), a recent re-analysis of the same dataset by Dudas and Rambaut (2014) suggested that Guinea 2014 EBOV actually is ZEBOV. Under the same hypothesis as used by these authors (the molecular clock hypothesis), we reinforce their conclusion by providing a statistical assessment of the location of the root of the Zaïre lineage. Our analysis unambiguously supports Guinea 2014 EBOV as a member of the Zaïre lineage. In addition, we also show that some uncertainty exists so as to the location of the root of the genus Ebolavirus. We release the software we used for these re-analyses. RootAnnotator allows for the easy determination of branch root posterior probability from any posterior sample of clocked trees and is freely available at http://sourceforge.net/projects/rootannotator/. Public Library of Science 2014-06-16 /pmc/articles/PMC4073806/ /pubmed/24987574 http://dx.doi.org/10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86 Text en http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research
Calvignac-Spencer, Sébastien
Schulze, Jakob M.
Zickmann, Franziska
Renard, Bernhard Y.
Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage
title Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage
title_full Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage
title_fullStr Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage
title_full_unstemmed Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage
title_short Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage
title_sort clock rooting further demonstrates that guinea 2014 ebov is a member of the zaïre lineage
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073806/
https://www.ncbi.nlm.nih.gov/pubmed/24987574
http://dx.doi.org/10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86
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