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Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression

BACKGROUND: Support vector regression (SVR) and Gaussian process regression (GPR) were used for the analysis of electroanalytical experimental data to estimate diffusion coefficients. RESULTS: For simulated cyclic voltammograms based on the EC, E(qr), and E(qr)C mechanisms these regression algorithm...

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Autores principales: Bogdan, Martin, Brugger, Dominik, Rosenstiel, Wolfgang, Speiser, Bernd
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4074154/
https://www.ncbi.nlm.nih.gov/pubmed/24987463
http://dx.doi.org/10.1186/1758-2946-6-30
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author Bogdan, Martin
Brugger, Dominik
Rosenstiel, Wolfgang
Speiser, Bernd
author_facet Bogdan, Martin
Brugger, Dominik
Rosenstiel, Wolfgang
Speiser, Bernd
author_sort Bogdan, Martin
collection PubMed
description BACKGROUND: Support vector regression (SVR) and Gaussian process regression (GPR) were used for the analysis of electroanalytical experimental data to estimate diffusion coefficients. RESULTS: For simulated cyclic voltammograms based on the EC, E(qr), and E(qr)C mechanisms these regression algorithms in combination with nonlinear kernel/covariance functions yielded diffusion coefficients with higher accuracy as compared to the standard approach of calculating diffusion coefficients relying on the Nicholson-Shain equation. The level of accuracy achieved by SVR and GPR is virtually independent of the rate constants governing the respective reaction steps. Further, the reduction of high-dimensional voltammetric signals by manual selection of typical voltammetric peak features decreased the performance of both regression algorithms compared to a reduction by downsampling or principal component analysis. After training on simulated data sets, diffusion coefficients were estimated by the regression algorithms for experimental data comprising voltammetric signals for three organometallic complexes. CONCLUSIONS: Estimated diffusion coefficients closely matched the values determined by the parameter fitting method, but reduced the required computational time considerably for one of the reaction mechanisms. The automated processing of voltammograms according to the regression algorithms yields better results than the conventional analysis of peak-related data.
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spelling pubmed-40741542014-07-01 Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression Bogdan, Martin Brugger, Dominik Rosenstiel, Wolfgang Speiser, Bernd J Cheminform Research Article BACKGROUND: Support vector regression (SVR) and Gaussian process regression (GPR) were used for the analysis of electroanalytical experimental data to estimate diffusion coefficients. RESULTS: For simulated cyclic voltammograms based on the EC, E(qr), and E(qr)C mechanisms these regression algorithms in combination with nonlinear kernel/covariance functions yielded diffusion coefficients with higher accuracy as compared to the standard approach of calculating diffusion coefficients relying on the Nicholson-Shain equation. The level of accuracy achieved by SVR and GPR is virtually independent of the rate constants governing the respective reaction steps. Further, the reduction of high-dimensional voltammetric signals by manual selection of typical voltammetric peak features decreased the performance of both regression algorithms compared to a reduction by downsampling or principal component analysis. After training on simulated data sets, diffusion coefficients were estimated by the regression algorithms for experimental data comprising voltammetric signals for three organometallic complexes. CONCLUSIONS: Estimated diffusion coefficients closely matched the values determined by the parameter fitting method, but reduced the required computational time considerably for one of the reaction mechanisms. The automated processing of voltammograms according to the regression algorithms yields better results than the conventional analysis of peak-related data. BioMed Central 2014-05-28 /pmc/articles/PMC4074154/ /pubmed/24987463 http://dx.doi.org/10.1186/1758-2946-6-30 Text en Copyright © 2014 Bogdan et al.; licensee Chemistry Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Bogdan, Martin
Brugger, Dominik
Rosenstiel, Wolfgang
Speiser, Bernd
Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression
title Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression
title_full Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression
title_fullStr Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression
title_full_unstemmed Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression
title_short Estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression
title_sort estimation of diffusion coefficients from voltammetric signals by support vector and gaussian process regression
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4074154/
https://www.ncbi.nlm.nih.gov/pubmed/24987463
http://dx.doi.org/10.1186/1758-2946-6-30
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