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BioC interoperability track overview

BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured c...

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Autores principales: Comeau, Donald C., Batista-Navarro, Riza Theresa, Dai, Hong-Jie, Islamaj Doğan, Rezarta, Jimeno Yepes, Antonio, Khare, Ritu, Lu, Zhiyong, Marques, Hernani, Mattingly, Carolyn J., Neves, Mariana, Peng, Yifan, Rak, Rafal, Rinaldi, Fabio, Tsai, Richard Tzong-Han, Verspoor, Karin, Wiegers, Thomas C., Wu, Cathy H., Wilbur, W. John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4074764/
https://www.ncbi.nlm.nih.gov/pubmed/24980129
http://dx.doi.org/10.1093/database/bau053
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author Comeau, Donald C.
Batista-Navarro, Riza Theresa
Dai, Hong-Jie
Islamaj Doğan, Rezarta
Jimeno Yepes, Antonio
Khare, Ritu
Lu, Zhiyong
Marques, Hernani
Mattingly, Carolyn J.
Neves, Mariana
Peng, Yifan
Rak, Rafal
Rinaldi, Fabio
Tsai, Richard Tzong-Han
Verspoor, Karin
Wiegers, Thomas C.
Wu, Cathy H.
Wilbur, W. John
author_facet Comeau, Donald C.
Batista-Navarro, Riza Theresa
Dai, Hong-Jie
Islamaj Doğan, Rezarta
Jimeno Yepes, Antonio
Khare, Ritu
Lu, Zhiyong
Marques, Hernani
Mattingly, Carolyn J.
Neves, Mariana
Peng, Yifan
Rak, Rafal
Rinaldi, Fabio
Tsai, Richard Tzong-Han
Verspoor, Karin
Wiegers, Thomas C.
Wu, Cathy H.
Wilbur, W. John
author_sort Comeau, Donald C.
collection PubMed
description BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured contributions using or highlighting the BioC format. These contributions included additional implementations of BioC, many new corpora in the format, biomedical NLP tools consuming and producing the format and online services using the format. The ease of use, broad support and rapidly growing number of tools demonstrate the need for and value of the BioC format. Database URL: http://bioc.sourceforge.net/
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spelling pubmed-40747642014-07-01 BioC interoperability track overview Comeau, Donald C. Batista-Navarro, Riza Theresa Dai, Hong-Jie Islamaj Doğan, Rezarta Jimeno Yepes, Antonio Khare, Ritu Lu, Zhiyong Marques, Hernani Mattingly, Carolyn J. Neves, Mariana Peng, Yifan Rak, Rafal Rinaldi, Fabio Tsai, Richard Tzong-Han Verspoor, Karin Wiegers, Thomas C. Wu, Cathy H. Wilbur, W. John Database (Oxford) Original Article BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured contributions using or highlighting the BioC format. These contributions included additional implementations of BioC, many new corpora in the format, biomedical NLP tools consuming and producing the format and online services using the format. The ease of use, broad support and rapidly growing number of tools demonstrate the need for and value of the BioC format. Database URL: http://bioc.sourceforge.net/ Oxford University Press 2014-06-28 /pmc/articles/PMC4074764/ /pubmed/24980129 http://dx.doi.org/10.1093/database/bau053 Text en Published by Oxford University 2014. This work is written by US Government employees and is in the public domain in the US.
spellingShingle Original Article
Comeau, Donald C.
Batista-Navarro, Riza Theresa
Dai, Hong-Jie
Islamaj Doğan, Rezarta
Jimeno Yepes, Antonio
Khare, Ritu
Lu, Zhiyong
Marques, Hernani
Mattingly, Carolyn J.
Neves, Mariana
Peng, Yifan
Rak, Rafal
Rinaldi, Fabio
Tsai, Richard Tzong-Han
Verspoor, Karin
Wiegers, Thomas C.
Wu, Cathy H.
Wilbur, W. John
BioC interoperability track overview
title BioC interoperability track overview
title_full BioC interoperability track overview
title_fullStr BioC interoperability track overview
title_full_unstemmed BioC interoperability track overview
title_short BioC interoperability track overview
title_sort bioc interoperability track overview
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4074764/
https://www.ncbi.nlm.nih.gov/pubmed/24980129
http://dx.doi.org/10.1093/database/bau053
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