Cargando…

Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy

[Image: see text] The present study demonstrates the importance of adequate precision when reporting the δ and J parameters of frequency domain (1)H NMR (HNMR) data. Using a variety of structural classes (terpenoids, phenolics, alkaloids) from different taxa (plants, cyanobacteria), this study devel...

Descripción completa

Detalles Bibliográficos
Autores principales: Pauli, Guido F., Chen, Shao-Nong, Lankin, David C., Bisson, Jonathan, Case, Ryan J., Chadwick, Lucas R., Gödecke, Tanja, Inui, Taichi, Krunic, Aleksej, Jaki, Birgit U., McAlpine, James B., Mo, Shunyan, Napolitano, José G., Orjala, Jimmy, Lehtivarjo, Juuso, Korhonen, Samuli-Petrus, Niemitz, Matthias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society and American Society of Pharmacognosy 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076039/
https://www.ncbi.nlm.nih.gov/pubmed/24895010
http://dx.doi.org/10.1021/np5002384
_version_ 1782323441002610688
author Pauli, Guido F.
Chen, Shao-Nong
Lankin, David C.
Bisson, Jonathan
Case, Ryan J.
Chadwick, Lucas R.
Gödecke, Tanja
Inui, Taichi
Krunic, Aleksej
Jaki, Birgit U.
McAlpine, James B.
Mo, Shunyan
Napolitano, José G.
Orjala, Jimmy
Lehtivarjo, Juuso
Korhonen, Samuli-Petrus
Niemitz, Matthias
author_facet Pauli, Guido F.
Chen, Shao-Nong
Lankin, David C.
Bisson, Jonathan
Case, Ryan J.
Chadwick, Lucas R.
Gödecke, Tanja
Inui, Taichi
Krunic, Aleksej
Jaki, Birgit U.
McAlpine, James B.
Mo, Shunyan
Napolitano, José G.
Orjala, Jimmy
Lehtivarjo, Juuso
Korhonen, Samuli-Petrus
Niemitz, Matthias
author_sort Pauli, Guido F.
collection PubMed
description [Image: see text] The present study demonstrates the importance of adequate precision when reporting the δ and J parameters of frequency domain (1)H NMR (HNMR) data. Using a variety of structural classes (terpenoids, phenolics, alkaloids) from different taxa (plants, cyanobacteria), this study develops rationales that explain the importance of enhanced precision in NMR spectroscopic analysis and rationalizes the need for reporting Δδ and ΔJ values at the 0.1–1 ppb and 10 mHz level, respectively. Spectral simulations paired with iteration are shown to be essential tools for complete spectral interpretation, adequate precision, and unambiguous HNMR-driven dereplication and metabolomic analysis. The broader applicability of the recommendation relates to the physicochemical properties of hydrogen ((1)H) and its ubiquity in organic molecules, making HNMR spectra an integral component of structure elucidation and verification. Regardless of origin or molecular weight, the HNMR spectrum of a compound can be very complex and encode a wealth of structural information that is often obscured by limited spectral dispersion and the occurrence of higher order effects. This altogether limits spectral interpretation, confines decoding of the underlying spin parameters, and explains the major challenge associated with the translation of HNMR spectra into tabulated information. On the other hand, the reproducibility of the spectral data set of any (new) chemical entity is essential for its structure elucidation and subsequent dereplication. Handling and documenting HNMR data with adequate precision is critical for establishing unequivocal links between chemical structure, analytical data, metabolomes, and biological activity. Using the full potential of HNMR spectra will facilitate the general reproducibility for future studies of bioactive chemicals, especially of compounds obtained from the diversity of terrestrial and marine organisms.
format Online
Article
Text
id pubmed-4076039
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher American Chemical Society and American Society of Pharmacognosy
record_format MEDLINE/PubMed
spelling pubmed-40760392015-06-04 Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy Pauli, Guido F. Chen, Shao-Nong Lankin, David C. Bisson, Jonathan Case, Ryan J. Chadwick, Lucas R. Gödecke, Tanja Inui, Taichi Krunic, Aleksej Jaki, Birgit U. McAlpine, James B. Mo, Shunyan Napolitano, José G. Orjala, Jimmy Lehtivarjo, Juuso Korhonen, Samuli-Petrus Niemitz, Matthias J Nat Prod [Image: see text] The present study demonstrates the importance of adequate precision when reporting the δ and J parameters of frequency domain (1)H NMR (HNMR) data. Using a variety of structural classes (terpenoids, phenolics, alkaloids) from different taxa (plants, cyanobacteria), this study develops rationales that explain the importance of enhanced precision in NMR spectroscopic analysis and rationalizes the need for reporting Δδ and ΔJ values at the 0.1–1 ppb and 10 mHz level, respectively. Spectral simulations paired with iteration are shown to be essential tools for complete spectral interpretation, adequate precision, and unambiguous HNMR-driven dereplication and metabolomic analysis. The broader applicability of the recommendation relates to the physicochemical properties of hydrogen ((1)H) and its ubiquity in organic molecules, making HNMR spectra an integral component of structure elucidation and verification. Regardless of origin or molecular weight, the HNMR spectrum of a compound can be very complex and encode a wealth of structural information that is often obscured by limited spectral dispersion and the occurrence of higher order effects. This altogether limits spectral interpretation, confines decoding of the underlying spin parameters, and explains the major challenge associated with the translation of HNMR spectra into tabulated information. On the other hand, the reproducibility of the spectral data set of any (new) chemical entity is essential for its structure elucidation and subsequent dereplication. Handling and documenting HNMR data with adequate precision is critical for establishing unequivocal links between chemical structure, analytical data, metabolomes, and biological activity. Using the full potential of HNMR spectra will facilitate the general reproducibility for future studies of bioactive chemicals, especially of compounds obtained from the diversity of terrestrial and marine organisms. American Chemical Society and American Society of Pharmacognosy 2014-06-04 2014-06-27 /pmc/articles/PMC4076039/ /pubmed/24895010 http://dx.doi.org/10.1021/np5002384 Text en Copyright © 2014 American Chemical Society and American Society of Pharmacognosy Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html)
spellingShingle Pauli, Guido F.
Chen, Shao-Nong
Lankin, David C.
Bisson, Jonathan
Case, Ryan J.
Chadwick, Lucas R.
Gödecke, Tanja
Inui, Taichi
Krunic, Aleksej
Jaki, Birgit U.
McAlpine, James B.
Mo, Shunyan
Napolitano, José G.
Orjala, Jimmy
Lehtivarjo, Juuso
Korhonen, Samuli-Petrus
Niemitz, Matthias
Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy
title Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy
title_full Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy
title_fullStr Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy
title_full_unstemmed Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy
title_short Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy
title_sort essential parameters for structural analysis and dereplication by (1)h nmr spectroscopy
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076039/
https://www.ncbi.nlm.nih.gov/pubmed/24895010
http://dx.doi.org/10.1021/np5002384
work_keys_str_mv AT pauliguidof essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT chenshaonong essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT lankindavidc essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT bissonjonathan essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT caseryanj essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT chadwicklucasr essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT godecketanja essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT inuitaichi essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT krunicaleksej essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT jakibirgitu essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT mcalpinejamesb essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT moshunyan essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT napolitanojoseg essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT orjalajimmy essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT lehtivarjojuuso essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT korhonensamulipetrus essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy
AT niemitzmatthias essentialparametersforstructuralanalysisanddereplicationby1hnmrspectroscopy