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Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy
[Image: see text] The present study demonstrates the importance of adequate precision when reporting the δ and J parameters of frequency domain (1)H NMR (HNMR) data. Using a variety of structural classes (terpenoids, phenolics, alkaloids) from different taxa (plants, cyanobacteria), this study devel...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society and American Society of Pharmacognosy
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076039/ https://www.ncbi.nlm.nih.gov/pubmed/24895010 http://dx.doi.org/10.1021/np5002384 |
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author | Pauli, Guido F. Chen, Shao-Nong Lankin, David C. Bisson, Jonathan Case, Ryan J. Chadwick, Lucas R. Gödecke, Tanja Inui, Taichi Krunic, Aleksej Jaki, Birgit U. McAlpine, James B. Mo, Shunyan Napolitano, José G. Orjala, Jimmy Lehtivarjo, Juuso Korhonen, Samuli-Petrus Niemitz, Matthias |
author_facet | Pauli, Guido F. Chen, Shao-Nong Lankin, David C. Bisson, Jonathan Case, Ryan J. Chadwick, Lucas R. Gödecke, Tanja Inui, Taichi Krunic, Aleksej Jaki, Birgit U. McAlpine, James B. Mo, Shunyan Napolitano, José G. Orjala, Jimmy Lehtivarjo, Juuso Korhonen, Samuli-Petrus Niemitz, Matthias |
author_sort | Pauli, Guido F. |
collection | PubMed |
description | [Image: see text] The present study demonstrates the importance of adequate precision when reporting the δ and J parameters of frequency domain (1)H NMR (HNMR) data. Using a variety of structural classes (terpenoids, phenolics, alkaloids) from different taxa (plants, cyanobacteria), this study develops rationales that explain the importance of enhanced precision in NMR spectroscopic analysis and rationalizes the need for reporting Δδ and ΔJ values at the 0.1–1 ppb and 10 mHz level, respectively. Spectral simulations paired with iteration are shown to be essential tools for complete spectral interpretation, adequate precision, and unambiguous HNMR-driven dereplication and metabolomic analysis. The broader applicability of the recommendation relates to the physicochemical properties of hydrogen ((1)H) and its ubiquity in organic molecules, making HNMR spectra an integral component of structure elucidation and verification. Regardless of origin or molecular weight, the HNMR spectrum of a compound can be very complex and encode a wealth of structural information that is often obscured by limited spectral dispersion and the occurrence of higher order effects. This altogether limits spectral interpretation, confines decoding of the underlying spin parameters, and explains the major challenge associated with the translation of HNMR spectra into tabulated information. On the other hand, the reproducibility of the spectral data set of any (new) chemical entity is essential for its structure elucidation and subsequent dereplication. Handling and documenting HNMR data with adequate precision is critical for establishing unequivocal links between chemical structure, analytical data, metabolomes, and biological activity. Using the full potential of HNMR spectra will facilitate the general reproducibility for future studies of bioactive chemicals, especially of compounds obtained from the diversity of terrestrial and marine organisms. |
format | Online Article Text |
id | pubmed-4076039 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society and American Society of Pharmacognosy |
record_format | MEDLINE/PubMed |
spelling | pubmed-40760392015-06-04 Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy Pauli, Guido F. Chen, Shao-Nong Lankin, David C. Bisson, Jonathan Case, Ryan J. Chadwick, Lucas R. Gödecke, Tanja Inui, Taichi Krunic, Aleksej Jaki, Birgit U. McAlpine, James B. Mo, Shunyan Napolitano, José G. Orjala, Jimmy Lehtivarjo, Juuso Korhonen, Samuli-Petrus Niemitz, Matthias J Nat Prod [Image: see text] The present study demonstrates the importance of adequate precision when reporting the δ and J parameters of frequency domain (1)H NMR (HNMR) data. Using a variety of structural classes (terpenoids, phenolics, alkaloids) from different taxa (plants, cyanobacteria), this study develops rationales that explain the importance of enhanced precision in NMR spectroscopic analysis and rationalizes the need for reporting Δδ and ΔJ values at the 0.1–1 ppb and 10 mHz level, respectively. Spectral simulations paired with iteration are shown to be essential tools for complete spectral interpretation, adequate precision, and unambiguous HNMR-driven dereplication and metabolomic analysis. The broader applicability of the recommendation relates to the physicochemical properties of hydrogen ((1)H) and its ubiquity in organic molecules, making HNMR spectra an integral component of structure elucidation and verification. Regardless of origin or molecular weight, the HNMR spectrum of a compound can be very complex and encode a wealth of structural information that is often obscured by limited spectral dispersion and the occurrence of higher order effects. This altogether limits spectral interpretation, confines decoding of the underlying spin parameters, and explains the major challenge associated with the translation of HNMR spectra into tabulated information. On the other hand, the reproducibility of the spectral data set of any (new) chemical entity is essential for its structure elucidation and subsequent dereplication. Handling and documenting HNMR data with adequate precision is critical for establishing unequivocal links between chemical structure, analytical data, metabolomes, and biological activity. Using the full potential of HNMR spectra will facilitate the general reproducibility for future studies of bioactive chemicals, especially of compounds obtained from the diversity of terrestrial and marine organisms. American Chemical Society and American Society of Pharmacognosy 2014-06-04 2014-06-27 /pmc/articles/PMC4076039/ /pubmed/24895010 http://dx.doi.org/10.1021/np5002384 Text en Copyright © 2014 American Chemical Society and American Society of Pharmacognosy Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | Pauli, Guido F. Chen, Shao-Nong Lankin, David C. Bisson, Jonathan Case, Ryan J. Chadwick, Lucas R. Gödecke, Tanja Inui, Taichi Krunic, Aleksej Jaki, Birgit U. McAlpine, James B. Mo, Shunyan Napolitano, José G. Orjala, Jimmy Lehtivarjo, Juuso Korhonen, Samuli-Petrus Niemitz, Matthias Essential Parameters for Structural Analysis and Dereplication by (1)H NMR Spectroscopy |
title | Essential Parameters for Structural Analysis and Dereplication
by (1)H NMR Spectroscopy |
title_full | Essential Parameters for Structural Analysis and Dereplication
by (1)H NMR Spectroscopy |
title_fullStr | Essential Parameters for Structural Analysis and Dereplication
by (1)H NMR Spectroscopy |
title_full_unstemmed | Essential Parameters for Structural Analysis and Dereplication
by (1)H NMR Spectroscopy |
title_short | Essential Parameters for Structural Analysis and Dereplication
by (1)H NMR Spectroscopy |
title_sort | essential parameters for structural analysis and dereplication
by (1)h nmr spectroscopy |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076039/ https://www.ncbi.nlm.nih.gov/pubmed/24895010 http://dx.doi.org/10.1021/np5002384 |
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