Cargando…

Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study

The rational design of a glycolipid application (e.g. drug delivery) with a tailored property depends on the detailed understanding of its structure and dynamics. Because of the complexity of sugar stereochemistry, we have undertaken a simulation study on the conformational dynamics of a set of synt...

Descripción completa

Detalles Bibliográficos
Autores principales: ManickamAchari, Vijayan, Bryce, Richard A., Hashim, Rauzah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076255/
https://www.ncbi.nlm.nih.gov/pubmed/24978205
http://dx.doi.org/10.1371/journal.pone.0101110
_version_ 1782323463369785344
author ManickamAchari, Vijayan
Bryce, Richard A.
Hashim, Rauzah
author_facet ManickamAchari, Vijayan
Bryce, Richard A.
Hashim, Rauzah
author_sort ManickamAchari, Vijayan
collection PubMed
description The rational design of a glycolipid application (e.g. drug delivery) with a tailored property depends on the detailed understanding of its structure and dynamics. Because of the complexity of sugar stereochemistry, we have undertaken a simulation study on the conformational dynamics of a set of synthetic glycosides with different sugar groups and chain design, namely dodecyl β-maltoside, dodecyl β-cellobioside, dodecyl β-isomaltoside and a C(12)C(10) branched β-maltoside under anhydrous conditions. We examined the chain structure in detail, including the chain packing, gauche/trans conformations and chain tilting. In addition, we also investigated the rotational dynamics of the headgroup and alkyl chains. Monoalkylated glycosides possess a small amount of gauche conformers (∼20%) in the hydrophobic region of the lamellar crystal (L(C)) phase. In contrast, the branched chain glycolipid in the fluid L(α) phase has a high gauche population of up to ∼40%. Rotational diffusion analysis reveals that the carbons closest to the headgroup have the highest correlation times. Furthermore, its value depends on sugar type, where the rotational dynamics of an isomaltose was found to be 11–15% and more restrained near the sugar, possibly due to the chain disorder and partial inter-digitation compared to the other monoalkylated lipids. Intriguingly, the present simulation demonstrates the chain from the branched glycolipid bilayer has the ability to enter into the hydrophilic region. This interesting feature of the anhydrous glycolipid bilayer simulation appears to arise from a combination of lipid crowding and the amphoteric nature of the sugar headgroups.
format Online
Article
Text
id pubmed-4076255
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-40762552014-07-02 Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study ManickamAchari, Vijayan Bryce, Richard A. Hashim, Rauzah PLoS One Research Article The rational design of a glycolipid application (e.g. drug delivery) with a tailored property depends on the detailed understanding of its structure and dynamics. Because of the complexity of sugar stereochemistry, we have undertaken a simulation study on the conformational dynamics of a set of synthetic glycosides with different sugar groups and chain design, namely dodecyl β-maltoside, dodecyl β-cellobioside, dodecyl β-isomaltoside and a C(12)C(10) branched β-maltoside under anhydrous conditions. We examined the chain structure in detail, including the chain packing, gauche/trans conformations and chain tilting. In addition, we also investigated the rotational dynamics of the headgroup and alkyl chains. Monoalkylated glycosides possess a small amount of gauche conformers (∼20%) in the hydrophobic region of the lamellar crystal (L(C)) phase. In contrast, the branched chain glycolipid in the fluid L(α) phase has a high gauche population of up to ∼40%. Rotational diffusion analysis reveals that the carbons closest to the headgroup have the highest correlation times. Furthermore, its value depends on sugar type, where the rotational dynamics of an isomaltose was found to be 11–15% and more restrained near the sugar, possibly due to the chain disorder and partial inter-digitation compared to the other monoalkylated lipids. Intriguingly, the present simulation demonstrates the chain from the branched glycolipid bilayer has the ability to enter into the hydrophilic region. This interesting feature of the anhydrous glycolipid bilayer simulation appears to arise from a combination of lipid crowding and the amphoteric nature of the sugar headgroups. Public Library of Science 2014-06-30 /pmc/articles/PMC4076255/ /pubmed/24978205 http://dx.doi.org/10.1371/journal.pone.0101110 Text en © 2014 ManickamAchari et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
ManickamAchari, Vijayan
Bryce, Richard A.
Hashim, Rauzah
Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study
title Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study
title_full Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study
title_fullStr Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study
title_full_unstemmed Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study
title_short Conformational Dynamics of Dry Lamellar Crystals of Sugar Based Lipids: An Atomistic Simulation Study
title_sort conformational dynamics of dry lamellar crystals of sugar based lipids: an atomistic simulation study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076255/
https://www.ncbi.nlm.nih.gov/pubmed/24978205
http://dx.doi.org/10.1371/journal.pone.0101110
work_keys_str_mv AT manickamacharivijayan conformationaldynamicsofdrylamellarcrystalsofsugarbasedlipidsanatomisticsimulationstudy
AT brycericharda conformationaldynamicsofdrylamellarcrystalsofsugarbasedlipidsanatomisticsimulationstudy
AT hashimrauzah conformationaldynamicsofdrylamellarcrystalsofsugarbasedlipidsanatomisticsimulationstudy