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Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual

DNA is the most stable nucleic acid and most important store of genetic information. DNA sequences are conserved in virtually all the cells of a multicellular organism. To analyze the sequences of various individuals with distinct pathological disorders, DNA is routinely isolated from blood, indepen...

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Autores principales: Gómez-Ramos, Alberto, Sanchez-Sanchez, Rafael, Muhaisen, Ashraf, Rábano, Alberto, Soriano, Eduardo, Avila, Jesús
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4077829/
https://www.ncbi.nlm.nih.gov/pubmed/24984015
http://dx.doi.org/10.1371/journal.pone.0101412
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author Gómez-Ramos, Alberto
Sanchez-Sanchez, Rafael
Muhaisen, Ashraf
Rábano, Alberto
Soriano, Eduardo
Avila, Jesús
author_facet Gómez-Ramos, Alberto
Sanchez-Sanchez, Rafael
Muhaisen, Ashraf
Rábano, Alberto
Soriano, Eduardo
Avila, Jesús
author_sort Gómez-Ramos, Alberto
collection PubMed
description DNA is the most stable nucleic acid and most important store of genetic information. DNA sequences are conserved in virtually all the cells of a multicellular organism. To analyze the sequences of various individuals with distinct pathological disorders, DNA is routinely isolated from blood, independently of the tissue that is the target of the disease. This approach has proven useful for the identification of familial diseases where mutations are present in parental germinal cells. With the capacity to compare DNA sequences from distinct tissues or cells, present technology can be used to study whether DNA sequences in tissues are invariant. Here we explored the presence of specific SNVs (Single Nucleotide Variations) in various tissues of the same individual. We tested for the presence of tissue-specific exonic SNVs, taking blood exome as a control. We analyzed the chromosomal location of these SNVs. The number of SNVs per chromosome was found not to depend on chromosome length, but mainly on the number of protein-coding genes per chromosome. Although similar but not identical patterns of chromosomal distribution of tissue-specific SNVs were found, clear differences were detected. This observation supports the notion that each tissue has a specific SNV exome signature.
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spelling pubmed-40778292014-07-03 Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual Gómez-Ramos, Alberto Sanchez-Sanchez, Rafael Muhaisen, Ashraf Rábano, Alberto Soriano, Eduardo Avila, Jesús PLoS One Research Article DNA is the most stable nucleic acid and most important store of genetic information. DNA sequences are conserved in virtually all the cells of a multicellular organism. To analyze the sequences of various individuals with distinct pathological disorders, DNA is routinely isolated from blood, independently of the tissue that is the target of the disease. This approach has proven useful for the identification of familial diseases where mutations are present in parental germinal cells. With the capacity to compare DNA sequences from distinct tissues or cells, present technology can be used to study whether DNA sequences in tissues are invariant. Here we explored the presence of specific SNVs (Single Nucleotide Variations) in various tissues of the same individual. We tested for the presence of tissue-specific exonic SNVs, taking blood exome as a control. We analyzed the chromosomal location of these SNVs. The number of SNVs per chromosome was found not to depend on chromosome length, but mainly on the number of protein-coding genes per chromosome. Although similar but not identical patterns of chromosomal distribution of tissue-specific SNVs were found, clear differences were detected. This observation supports the notion that each tissue has a specific SNV exome signature. Public Library of Science 2014-07-01 /pmc/articles/PMC4077829/ /pubmed/24984015 http://dx.doi.org/10.1371/journal.pone.0101412 Text en © 2014 Gómez-Ramos et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Gómez-Ramos, Alberto
Sanchez-Sanchez, Rafael
Muhaisen, Ashraf
Rábano, Alberto
Soriano, Eduardo
Avila, Jesús
Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual
title Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual
title_full Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual
title_fullStr Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual
title_full_unstemmed Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual
title_short Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual
title_sort similarities and differences between exome sequences found in a variety of tissues from the same individual
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4077829/
https://www.ncbi.nlm.nih.gov/pubmed/24984015
http://dx.doi.org/10.1371/journal.pone.0101412
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