Cargando…
Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual
DNA is the most stable nucleic acid and most important store of genetic information. DNA sequences are conserved in virtually all the cells of a multicellular organism. To analyze the sequences of various individuals with distinct pathological disorders, DNA is routinely isolated from blood, indepen...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4077829/ https://www.ncbi.nlm.nih.gov/pubmed/24984015 http://dx.doi.org/10.1371/journal.pone.0101412 |
_version_ | 1782323661522337792 |
---|---|
author | Gómez-Ramos, Alberto Sanchez-Sanchez, Rafael Muhaisen, Ashraf Rábano, Alberto Soriano, Eduardo Avila, Jesús |
author_facet | Gómez-Ramos, Alberto Sanchez-Sanchez, Rafael Muhaisen, Ashraf Rábano, Alberto Soriano, Eduardo Avila, Jesús |
author_sort | Gómez-Ramos, Alberto |
collection | PubMed |
description | DNA is the most stable nucleic acid and most important store of genetic information. DNA sequences are conserved in virtually all the cells of a multicellular organism. To analyze the sequences of various individuals with distinct pathological disorders, DNA is routinely isolated from blood, independently of the tissue that is the target of the disease. This approach has proven useful for the identification of familial diseases where mutations are present in parental germinal cells. With the capacity to compare DNA sequences from distinct tissues or cells, present technology can be used to study whether DNA sequences in tissues are invariant. Here we explored the presence of specific SNVs (Single Nucleotide Variations) in various tissues of the same individual. We tested for the presence of tissue-specific exonic SNVs, taking blood exome as a control. We analyzed the chromosomal location of these SNVs. The number of SNVs per chromosome was found not to depend on chromosome length, but mainly on the number of protein-coding genes per chromosome. Although similar but not identical patterns of chromosomal distribution of tissue-specific SNVs were found, clear differences were detected. This observation supports the notion that each tissue has a specific SNV exome signature. |
format | Online Article Text |
id | pubmed-4077829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-40778292014-07-03 Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual Gómez-Ramos, Alberto Sanchez-Sanchez, Rafael Muhaisen, Ashraf Rábano, Alberto Soriano, Eduardo Avila, Jesús PLoS One Research Article DNA is the most stable nucleic acid and most important store of genetic information. DNA sequences are conserved in virtually all the cells of a multicellular organism. To analyze the sequences of various individuals with distinct pathological disorders, DNA is routinely isolated from blood, independently of the tissue that is the target of the disease. This approach has proven useful for the identification of familial diseases where mutations are present in parental germinal cells. With the capacity to compare DNA sequences from distinct tissues or cells, present technology can be used to study whether DNA sequences in tissues are invariant. Here we explored the presence of specific SNVs (Single Nucleotide Variations) in various tissues of the same individual. We tested for the presence of tissue-specific exonic SNVs, taking blood exome as a control. We analyzed the chromosomal location of these SNVs. The number of SNVs per chromosome was found not to depend on chromosome length, but mainly on the number of protein-coding genes per chromosome. Although similar but not identical patterns of chromosomal distribution of tissue-specific SNVs were found, clear differences were detected. This observation supports the notion that each tissue has a specific SNV exome signature. Public Library of Science 2014-07-01 /pmc/articles/PMC4077829/ /pubmed/24984015 http://dx.doi.org/10.1371/journal.pone.0101412 Text en © 2014 Gómez-Ramos et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Gómez-Ramos, Alberto Sanchez-Sanchez, Rafael Muhaisen, Ashraf Rábano, Alberto Soriano, Eduardo Avila, Jesús Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual |
title | Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual |
title_full | Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual |
title_fullStr | Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual |
title_full_unstemmed | Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual |
title_short | Similarities and Differences between Exome Sequences Found in a Variety of Tissues from the Same Individual |
title_sort | similarities and differences between exome sequences found in a variety of tissues from the same individual |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4077829/ https://www.ncbi.nlm.nih.gov/pubmed/24984015 http://dx.doi.org/10.1371/journal.pone.0101412 |
work_keys_str_mv | AT gomezramosalberto similaritiesanddifferencesbetweenexomesequencesfoundinavarietyoftissuesfromthesameindividual AT sanchezsanchezrafael similaritiesanddifferencesbetweenexomesequencesfoundinavarietyoftissuesfromthesameindividual AT muhaisenashraf similaritiesanddifferencesbetweenexomesequencesfoundinavarietyoftissuesfromthesameindividual AT rabanoalberto similaritiesanddifferencesbetweenexomesequencesfoundinavarietyoftissuesfromthesameindividual AT sorianoeduardo similaritiesanddifferencesbetweenexomesequencesfoundinavarietyoftissuesfromthesameindividual AT avilajesus similaritiesanddifferencesbetweenexomesequencesfoundinavarietyoftissuesfromthesameindividual |