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Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli
Stable (15)N isotopes have been used to examine movement of nitrogen (N) through various pools of the global N cycle. A central reaction in the cycle involves the reduction of nitrate (NO(−)(3)) to nitrite (NO(−)(2)) catalyzed by nitrate reductase (NR). Discrimination against (15)N by NR is a major...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4078254/ https://www.ncbi.nlm.nih.gov/pubmed/25071800 http://dx.doi.org/10.3389/fpls.2014.00317 |
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author | Carlisle, Eli Yarnes, Chris Toney, Michael D. Bloom, Arnold J. |
author_facet | Carlisle, Eli Yarnes, Chris Toney, Michael D. Bloom, Arnold J. |
author_sort | Carlisle, Eli |
collection | PubMed |
description | Stable (15)N isotopes have been used to examine movement of nitrogen (N) through various pools of the global N cycle. A central reaction in the cycle involves the reduction of nitrate (NO(−)(3)) to nitrite (NO(−)(2)) catalyzed by nitrate reductase (NR). Discrimination against (15)N by NR is a major determinant of isotopic differences among N pools. Here, we measured in vitro (15)N discrimination by several NRs purified from plants, fungi, and a bacterium to determine the intrinsic (15)N discrimination by the enzyme and to evaluate the validity of measurements made using (15)N-enriched NO(−)(3). Observed NR isotope discrimination ranged from 22 to 32‰ (kinetic isotope effects of 1.022–1.032) among the different isozymes at natural abundance (15)N (0.37%). As the fractional (15)N content of substrate NO(−)(3) increased from natural abundance, the product (15)N fraction deviated significantly from that expected based on substrate enrichment and (15)N discrimination measured at natural abundance. Additionally, isotopic discrimination by denitrifying bacteria used to reduce NO(−)(3) and NO(−)(2) in some protocols became a greater source of error as (15)N enrichment increased. We briefly discuss potential causes of the experimental artifacts with enriched (15)N and recommend against the use of highly enriched (15)N tracers to study N discrimination in plants or soils. |
format | Online Article Text |
id | pubmed-4078254 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-40782542014-07-28 Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli Carlisle, Eli Yarnes, Chris Toney, Michael D. Bloom, Arnold J. Front Plant Sci Plant Science Stable (15)N isotopes have been used to examine movement of nitrogen (N) through various pools of the global N cycle. A central reaction in the cycle involves the reduction of nitrate (NO(−)(3)) to nitrite (NO(−)(2)) catalyzed by nitrate reductase (NR). Discrimination against (15)N by NR is a major determinant of isotopic differences among N pools. Here, we measured in vitro (15)N discrimination by several NRs purified from plants, fungi, and a bacterium to determine the intrinsic (15)N discrimination by the enzyme and to evaluate the validity of measurements made using (15)N-enriched NO(−)(3). Observed NR isotope discrimination ranged from 22 to 32‰ (kinetic isotope effects of 1.022–1.032) among the different isozymes at natural abundance (15)N (0.37%). As the fractional (15)N content of substrate NO(−)(3) increased from natural abundance, the product (15)N fraction deviated significantly from that expected based on substrate enrichment and (15)N discrimination measured at natural abundance. Additionally, isotopic discrimination by denitrifying bacteria used to reduce NO(−)(3) and NO(−)(2) in some protocols became a greater source of error as (15)N enrichment increased. We briefly discuss potential causes of the experimental artifacts with enriched (15)N and recommend against the use of highly enriched (15)N tracers to study N discrimination in plants or soils. Frontiers Media S.A. 2014-07-02 /pmc/articles/PMC4078254/ /pubmed/25071800 http://dx.doi.org/10.3389/fpls.2014.00317 Text en Copyright © 2014 Carlisle, Yarnes, Toney and Bloom. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Carlisle, Eli Yarnes, Chris Toney, Michael D. Bloom, Arnold J. Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli |
title | Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli |
title_full | Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli |
title_fullStr | Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli |
title_full_unstemmed | Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli |
title_short | Nitrate reductase (15)N discrimination in Arabidopsis thaliana, Zea mays, Aspergillus niger, Pichea angusta, and Escherichia coli |
title_sort | nitrate reductase (15)n discrimination in arabidopsis thaliana, zea mays, aspergillus niger, pichea angusta, and escherichia coli |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4078254/ https://www.ncbi.nlm.nih.gov/pubmed/25071800 http://dx.doi.org/10.3389/fpls.2014.00317 |
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