Cargando…

Structure and semi-sequence-specific RNA binding of Nrd1

In Saccharomyces cerevisiae, the Nrd1-dependent termination and processing pathways play an important role in surveillance and processing of non-coding ribonucleic acids (RNAs). The termination and subsequent processing is dependent on the Nrd1 complex consisting of two RNA-binding proteins Nrd1 and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bacikova, Veronika, Pasulka, Josef, Kubicek, Karel, Stefl, Richard
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	RNA
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4081072/ https://www.ncbi.nlm.nih.gov/pubmed/24860164 http://dx.doi.org/10.1093/nar/gku446

Ejemplares similares

Recognition of Transcription Termination Signal by the Nuclear Polyadenylated RNA-binding (NAB) 3 Protein
por: Hobor, Fruzsina, et al.
Publicado: (2011)

RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3′-end extended forms of snRNAs
por: Hrossova, Dominika, et al.
Publicado: (2015)

Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation
por: Holub, Peter, et al.
Publicado: (2012)

Budding yeast telomerase RNA transcription termination is dictated by the Nrd1/Nab3 non-coding RNA termination pathway
por: Noël, Jean-François, et al.
Publicado: (2012)

Nuclear mRNA quality control in yeast is mediated by Nrd1 co-transcriptional recruitment, as revealed by the targeting of Rho-induced aberrant transcripts
por: Honorine, Romy, et al.
Publicado: (2011)

The RNA-binding domain of influenzavirus non-structural protein-1 cooperatively binds to virus-specific RNA sequences in a structure-dependent manner
por: Marc, Daniel, et al.
Publicado: (2013)

Recognition of asymmetrically dimethylated arginine by TDRD3
por: Sikorsky, Tomas, et al.
Publicado: (2012)

Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer
por: Chen, Yu, et al.
Publicado: (2016)

The SRSF1 linker induces semi-conservative ESE binding by cooperating with the RRMs
por: Cho, Suhyung, et al.
Publicado: (2011)

The HSV-1 ICP27 RGG box specifically binds flexible, GC-rich sequences but not G-quartet structures
por: Corbin-Lickfett, Kara A., et al.
Publicado: (2009)

RNA-binding specificity of E. coli NusA
por: Prasch, Stefan, et al.
Publicado: (2009)

Structural insight into recognition of phosphorylated threonine‐4 of RNA polymerase II C‐terminal domain by Rtt103p
por: Jasnovidova, Olga, et al.
Publicado: (2017)

Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection
por: Zheng, Heping, et al.
Publicado: (2015)

An improved definition of the RNA-binding specificity of SECIS-binding protein 2, an essential component of the selenocysteine incorporation machinery
por: Cléry, A., et al.
Publicado: (2007)

Requirements for gene silencing mediated by U1 snRNA binding to a target sequence
por: Abad, Xabi, et al.
Publicado: (2008)

Is the sequence-specific binding of aminoacyl-tRNAs by EF-Tu universal among bacteria?
por: Schrader, Jared M., et al.
Publicado: (2011)

Intrinsically disordered RGG/RG domains mediate degenerate specificity in RNA binding
por: Ozdilek, Bagdeser A., et al.
Publicado: (2017)

Quantifying sequence and structural features of protein–RNA interactions
por: Li, Songling, et al.
Publicado: (2014)

The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution
por: Ganesh, Sravya, et al.
Publicado: (2020)

Base-specific spin-labeling of RNA for structure determination
por: Piton, Nelly, et al.
Publicado: (2007)

Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation
por: Andreev, Dmitri E., et al.
Publicado: (2012)

Pentamidine binds to tRNA through non-specific hydrophobic interactions and inhibits aminoacylation and translation
por: Sun, Tao, et al.
Publicado: (2008)

A specific role for the C-terminal region of the Poly(A)-binding protein in mRNA decay
por: Simón, Ernesto, et al.
Publicado: (2007)

RNA structure generates natural cooperativity between single-stranded RNA binding proteins targeting 5′ and 3′UTRs
por: Lin, Yi-Hsuan, et al.
Publicado: (2015)

Binding of human SLBP on the 3′-UTR of histone precursor H4-12 mRNA induces structural rearrangements that enable U7 snRNA anchoring
por: Jaeger, Sophie, et al.
Publicado: (2006)

Dicer structure and function: conserved and evolving features
por: Zapletal, David, et al.
Publicado: (2023)

Sequence-specific recognition of colicin E5, a tRNA-targeting ribonuclease
por: Ogawa, Tetsuhiro, et al.
Publicado: (2006)

Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures
por: Westhof, Eric, et al.
Publicado: (2022)

N (6)-methyladenosine alters RNA structure to regulate binding of a low-complexity protein
por: Liu, Nian, et al.
Publicado: (2017)

Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3)
por: Li, Kuohan, et al.
Publicado: (2021)

The RNA-binding protein TbDRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes
por: Estévez, Antonio M.
Publicado: (2008)

Characterization of anti-NF-κB RNA aptamer-binding specificity in vitro and in the yeast three-hybrid system
por: Wurster, Susan E., et al.
Publicado: (2009)

Sequence–structure relationships in RNA loops: establishing the basis for loop homology modeling
por: Schudoma, Christian, et al.
Publicado: (2010)

Structural basis of Nrd1–Nab3 heterodimerization
por: Chaves-Arquero, Belén, et al.
Publicado: (2022)

Specific sequence determinants of miR-15/107 microRNA gene group targets
por: Nelson, Peter T., et al.
Publicado: (2011)

Melting temperature highlights functionally important RNA structure and sequence elements in yeast mRNA coding regions
por: Qi, Fei, et al.
Publicado: (2017)

Unconventional miR-122 binding stabilizes the HCV genome by forming a trimolecular RNA structure
por: Mortimer, Stefanie A., et al.
Publicado: (2013)

FRAXE-associated mental retardation protein (FMR2) is an RNA-binding protein with high affinity for G-quartet RNA forming structure
por: Bensaid, Mounia, et al.
Publicado: (2009)

Site-specific fluorescence dynamics in an RNA ‘thermometer’ reveals the role of ribosome binding in its temperature-sensitive switch function
por: Narayan, Satya, et al.
Publicado: (2015)

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures
por: Pánek, Josef, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_qihoo7ta831og70eb9dja4k889