Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()

We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interfa...

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Detalles Bibliográficos
Autores principales: Hulstaert, Niels, Reisinger, Florian, Rameseder, Jonathan, Barsnes, Harald, Vizcaíno, Juan Antonio, Martens, Lennart
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2013
Materias:
Technical Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085470/
https://www.ncbi.nlm.nih.gov/pubmed/23603108
http://dx.doi.org/10.1016/j.jprot.2013.04.011
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author Hulstaert, Niels
Reisinger, Florian
Rameseder, Jonathan
Barsnes, Harald
Vizcaíno, Juan Antonio
Martens, Lennart
author_facet Hulstaert, Niels
Reisinger, Florian
Rameseder, Jonathan
Barsnes, Harald
Vizcaíno, Juan Antonio
Martens, Lennart
author_sort Hulstaert, Niels
collection PubMed
description We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics.
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spelling pubmed-40854702014-07-09 Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra() Hulstaert, Niels Reisinger, Florian Rameseder, Jonathan Barsnes, Harald Vizcaíno, Juan Antonio Martens, Lennart J Proteomics Technical Note We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics. Elsevier 2013-12-16 /pmc/articles/PMC4085470/ /pubmed/23603108 http://dx.doi.org/10.1016/j.jprot.2013.04.011 Text en © 2013 Elsevier B.V. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Technical Note
Hulstaert, Niels
Reisinger, Florian
Rameseder, Jonathan
Barsnes, Harald
Vizcaíno, Juan Antonio
Martens, Lennart
Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()
title Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()
title_full Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()
title_fullStr Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()
title_full_unstemmed Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()
title_short Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()
title_sort pride-asap: automatic fragment ion annotation of identified pride spectra()
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085470/
https://www.ncbi.nlm.nih.gov/pubmed/23603108
http://dx.doi.org/10.1016/j.jprot.2013.04.011
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