Cargando…

COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures

Hydrogen bonds are crucial factors that stabilize a complex ribonucleic acid (RNA) molecule's three-dimensional (3D) structure. Minute conformational changes can result in variations in the hydrogen bond interactions in a particular structure. Furthermore, networks of hydrogen bonds, especially...

Descripción completa

Detalles Bibliográficos
Autores principales:	Firdaus-Raih, Mohd, Hamdani, Hazrina Yusof, Nadzirin, Nurul, Ramlan, Effirul Ikhwan, Willett, Peter, Artymiuk, Peter J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086061/ https://www.ncbi.nlm.nih.gov/pubmed/24831543 http://dx.doi.org/10.1093/nar/gku438

Ejemplares similares

InterRNA: a database of base interactions in RNA structures
por: Appasamy, Sri Devan, et al.
Publicado: (2016)

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures
por: Nadzirin, Nurul, et al.
Publicado: (2012)

NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules
por: Hamdani, Hazrina Y., et al.
Publicado: (2012)

Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning
por: Ab Ghani, Nur Syatila, et al.
Publicado: (2019)

GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA
por: Ghani, Nur Syatila Ab, et al.
Publicado: (2022)

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank
por: Nadzirin, Nurul, et al.
Publicado: (2013)

Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures
por: Emrizal, Reeki, et al.
Publicado: (2021)

Comparative Sequence and Structure Analysis Reveals the Conservation and Diversity of Nucleotide Positions and Their Associated Tertiary Interactions in the Riboswitches
por: Appasamy, Sri D., et al.
Publicado: (2013)

DNA Tetrominoes: The Construction of DNA Nanostructures Using Self-Organised Heterogeneous Deoxyribonucleic Acids Shapes
por: Ong, Hui San, et al.
Publicado: (2015)

Proteins of Unknown Function in the Protein Data Bank (PDB): An Inventory of True Uncharacterized Proteins and Computational Tools for Their Analysis
por: Nadzirin, Nurul, et al.
Publicado: (2012)

In-silico design of computational nucleic acids for molecular information processing
por: Ramlan, Effirul Ikhwan, et al.
Publicado: (2013)

An analysis of simple computational strategies to facilitate the design of functional molecular information processors
por: Lee, Yiling, et al.
Publicado: (2016)

Novel base triples in RNA structures revealed by graph theoretical searching methods
por: Firdaus-Raih, Mohd, et al.
Publicado: (2011)

Alignment-Annotator web server: rendering and annotating sequence alignments
por: Gille, Christoph, et al.
Publicado: (2014)

Impact of Barrel Toasting on Ellagitannin Composition of Aged Cognac Eaux-de-Vie
por: Gadrat, Mathilde, et al.
Publicado: (2022)

Computational discovery and annotation of conserved small open reading frames in fungal genomes
por: Mat-Sharani, Shuhaila, et al.
Publicado: (2019)

Effects of cognac on coronary flow reserve and plasma antioxidant status in healthy young men
por: Kiviniemi, Tuomas O, et al.
Publicado: (2008)

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions
por: Chen, Shengquan, et al.
Publicado: (2021)

FLAN: a web server for influenza virus genome annotation
por: Bao, Yiming, et al.
Publicado: (2007)

BASys: a web server for automated bacterial genome annotation
por: Van Domselaar, Gary H., et al.
Publicado: (2005)

Companion: a web server for annotation and analysis of parasite genomes
por: Steinbiss, Sascha, et al.
Publicado: (2016)

PANNZER2: a rapid functional annotation web server
por: Törönen, Petri, et al.
Publicado: (2018)

Annotation of cell types (ACT): a convenient web server for cell type annotation
por: Quan, Fei, et al.
Publicado: (2023)

AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis
por: Geoffroy, Véronique, et al.
Publicado: (2021)

TAIGET: A small-molecule target identification and annotation web server
por: Wei, Xuxu, et al.
Publicado: (2022)

cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets
por: Crawford, Ryan D., et al.
Publicado: (2021)

Voltammetric Sensor Based on the Poly(p-aminobenzoic Acid) for the Simultaneous Quantification of Aromatic Aldehydes as Markers of Cognac and Brandy Quality
por: Ziyatdinova, Guzel, et al.
Publicado: (2023)

KOBAS server: a web-based platform for automated annotation and pathway identification
por: Wu, Jianmin, et al.
Publicado: (2006)

AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations
por: Vuong, Hue, et al.
Publicado: (2012)

PathwAX: a web server for network crosstalk based pathway annotation
por: Ogris, Christoph, et al.
Publicado: (2016)

PIANO: A Web Server for Pseudouridine-Site (Ψ) Identification and Functional Annotation
por: Song, Bowen, et al.
Publicado: (2020)

PhaGAA: an integrated web server platform for phage genome annotation and analysis
por: Wu, Jiawei, et al.
Publicado: (2023)

wTAM: a web server for annotation of weighted human microRNAs
por: Cui, Chunmei, et al.
Publicado: (2021)

CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer
por: Rubinacci, Simone, et al.
Publicado: (2015)

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
por: Xie, Chen, et al.
Publicado: (2011)

ncFANs: a web server for functional annotation of long non-coding RNAs
por: Liao, Qi, et al.
Publicado: (2011)

AnnoLnc: a web server for systematically annotating novel human lncRNAs
por: Hou, Mei, et al.
Publicado: (2016)

RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins
por: Hirsh, Layla, et al.
Publicado: (2018)

XSuLT: a web server for structural annotation and representation of sequence-structure alignments
por: Ochoa-Montaño, Bernardo, et al.
Publicado: (2017)

BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation
por: Baldazzi, Davide, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_vph40fcpvvs9coosp0m4d5kr9v