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Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling

Tracing rare stable isotopes from plant material through the ecosystem provides the most sensitive information about ecosystem processes; from CO(2) fluxes and soil organic matter formation to small-scale stable-isotope biomarker probing. Coupling multiple stable isotopes such as (13)C with (15)N, (...

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Autores principales: Soong, Jennifer L, Reuss, Dan, Pinney, Colin, Boyack, Ty, Haddix, Michelle L, Stewart, Catherine E, Cotrufo, M. Francesca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MyJove Corporation 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089423/
https://www.ncbi.nlm.nih.gov/pubmed/24457314
http://dx.doi.org/10.3791/51117
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author Soong, Jennifer L
Reuss, Dan
Pinney, Colin
Boyack, Ty
Haddix, Michelle L
Stewart, Catherine E
Cotrufo, M. Francesca
author_facet Soong, Jennifer L
Reuss, Dan
Pinney, Colin
Boyack, Ty
Haddix, Michelle L
Stewart, Catherine E
Cotrufo, M. Francesca
author_sort Soong, Jennifer L
collection PubMed
description Tracing rare stable isotopes from plant material through the ecosystem provides the most sensitive information about ecosystem processes; from CO(2) fluxes and soil organic matter formation to small-scale stable-isotope biomarker probing. Coupling multiple stable isotopes such as (13)C with (15)N, (18)O or (2)H has the potential to reveal even more information about complex stoichiometric relationships during biogeochemical transformations. Isotope labeled plant material has been used in various studies of litter decomposition and soil organic matter formation(1-4). From these and other studies, however, it has become apparent that structural components of plant material behave differently than metabolic components (i.e. leachable low molecular weight compounds) in terms of microbial utilization and long-term carbon storage(5-7). The ability to study structural and metabolic components separately provides a powerful new tool for advancing the forefront of ecosystem biogeochemical studies. Here we describe a method for producing (13)C and (15)N labeled plant material that is either uniformly labeled throughout the plant or differentially labeled in structural and metabolic plant components. Here, we present the construction and operation of a continuous (13)C and (15)N labeling chamber that can be modified to meet various research needs. Uniformly labeled plant material is produced by continuous labeling from seedling to harvest, while differential labeling is achieved by removing the growing plants from the chamber weeks prior to harvest. Representative results from growing Andropogon gerardii Kaw demonstrate the system's ability to efficiently label plant material at the targeted levels. Through this method we have produced plant material with a 4.4 atom%(13)C and 6.7 atom%(15)N uniform plant label, or material that is differentially labeled by up to 1.29 atom%(13)C and 0.56 atom%(15)N in its metabolic and structural components (hot water extractable and hot water residual components, respectively). Challenges lie in maintaining proper temperature, humidity, CO(2) concentration, and light levels in an airtight (13)C-CO(2) atmosphere for successful plant production. This chamber description represents a useful research tool to effectively produce uniformly or differentially multi-isotope labeled plant material for use in experiments on ecosystem biogeochemical cycling.
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spelling pubmed-40894232014-07-24 Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling Soong, Jennifer L Reuss, Dan Pinney, Colin Boyack, Ty Haddix, Michelle L Stewart, Catherine E Cotrufo, M. Francesca J Vis Exp Environmental Sciences Tracing rare stable isotopes from plant material through the ecosystem provides the most sensitive information about ecosystem processes; from CO(2) fluxes and soil organic matter formation to small-scale stable-isotope biomarker probing. Coupling multiple stable isotopes such as (13)C with (15)N, (18)O or (2)H has the potential to reveal even more information about complex stoichiometric relationships during biogeochemical transformations. Isotope labeled plant material has been used in various studies of litter decomposition and soil organic matter formation(1-4). From these and other studies, however, it has become apparent that structural components of plant material behave differently than metabolic components (i.e. leachable low molecular weight compounds) in terms of microbial utilization and long-term carbon storage(5-7). The ability to study structural and metabolic components separately provides a powerful new tool for advancing the forefront of ecosystem biogeochemical studies. Here we describe a method for producing (13)C and (15)N labeled plant material that is either uniformly labeled throughout the plant or differentially labeled in structural and metabolic plant components. Here, we present the construction and operation of a continuous (13)C and (15)N labeling chamber that can be modified to meet various research needs. Uniformly labeled plant material is produced by continuous labeling from seedling to harvest, while differential labeling is achieved by removing the growing plants from the chamber weeks prior to harvest. Representative results from growing Andropogon gerardii Kaw demonstrate the system's ability to efficiently label plant material at the targeted levels. Through this method we have produced plant material with a 4.4 atom%(13)C and 6.7 atom%(15)N uniform plant label, or material that is differentially labeled by up to 1.29 atom%(13)C and 0.56 atom%(15)N in its metabolic and structural components (hot water extractable and hot water residual components, respectively). Challenges lie in maintaining proper temperature, humidity, CO(2) concentration, and light levels in an airtight (13)C-CO(2) atmosphere for successful plant production. This chamber description represents a useful research tool to effectively produce uniformly or differentially multi-isotope labeled plant material for use in experiments on ecosystem biogeochemical cycling. MyJove Corporation 2014-01-16 /pmc/articles/PMC4089423/ /pubmed/24457314 http://dx.doi.org/10.3791/51117 Text en Copyright © 2014, Journal of Visualized Experiments http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visithttp://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Environmental Sciences
Soong, Jennifer L
Reuss, Dan
Pinney, Colin
Boyack, Ty
Haddix, Michelle L
Stewart, Catherine E
Cotrufo, M. Francesca
Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling
title Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling
title_full Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling
title_fullStr Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling
title_full_unstemmed Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling
title_short Design and Operation of a Continuous (13)C and (15)N Labeling Chamber for Uniform or Differential, Metabolic and Structural, Plant Isotope Labeling
title_sort design and operation of a continuous (13)c and (15)n labeling chamber for uniform or differential, metabolic and structural, plant isotope labeling
topic Environmental Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089423/
https://www.ncbi.nlm.nih.gov/pubmed/24457314
http://dx.doi.org/10.3791/51117
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