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A new crystal form of a hyperthermophilic endocellulase

The hyperthermophilic glycoside hydrolase family endocellulase 12 from the archaeon Pyrococcus furiosus (EGPf; Gene ID PF0854; EC 3.2.1.4) catalyzes the hydrolytic cleavage of the β-1,4-glucosidic linkage in β-glucan in lignocellulose biomass. A crystal of EGPf was previously prepared at pH 9.0 and...

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Autores principales: Kataoka, Misumi, Ishikawa, Kazuhiko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089524/
https://www.ncbi.nlm.nih.gov/pubmed/25005081
http://dx.doi.org/10.1107/S2053230X14010930
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author Kataoka, Misumi
Ishikawa, Kazuhiko
author_facet Kataoka, Misumi
Ishikawa, Kazuhiko
author_sort Kataoka, Misumi
collection PubMed
description The hyperthermophilic glycoside hydrolase family endocellulase 12 from the archaeon Pyrococcus furiosus (EGPf; Gene ID PF0854; EC 3.2.1.4) catalyzes the hydrolytic cleavage of the β-1,4-glucosidic linkage in β-glucan in lignocellulose biomass. A crystal of EGPf was previously prepared at pH 9.0 and its structure was determined at an atomic resolution of 1.07 Å. This article reports the crystallization of EGPf at the more physiologically relevant pH of 5.5. Structure determination showed that this new crystal form has the symmetry of space group C2. Two molecules of the enzyme are observed in the asymmetric unit. Crystal packing is weak at pH 5.5 owing to two flexible interfaces between symmetry-related molecules. Comparison of the EGPf structures obtained at pH 9.0 and pH 5.5 reveals a significant conformational difference at the active centre and in the surface loops. The interfaces in the vicinity of the flexible surface loops impact the quality of the EGPf crystal.
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spelling pubmed-40895242014-07-16 A new crystal form of a hyperthermophilic endocellulase Kataoka, Misumi Ishikawa, Kazuhiko Acta Crystallogr F Struct Biol Commun Structural Communications The hyperthermophilic glycoside hydrolase family endocellulase 12 from the archaeon Pyrococcus furiosus (EGPf; Gene ID PF0854; EC 3.2.1.4) catalyzes the hydrolytic cleavage of the β-1,4-glucosidic linkage in β-glucan in lignocellulose biomass. A crystal of EGPf was previously prepared at pH 9.0 and its structure was determined at an atomic resolution of 1.07 Å. This article reports the crystallization of EGPf at the more physiologically relevant pH of 5.5. Structure determination showed that this new crystal form has the symmetry of space group C2. Two molecules of the enzyme are observed in the asymmetric unit. Crystal packing is weak at pH 5.5 owing to two flexible interfaces between symmetry-related molecules. Comparison of the EGPf structures obtained at pH 9.0 and pH 5.5 reveals a significant conformational difference at the active centre and in the surface loops. The interfaces in the vicinity of the flexible surface loops impact the quality of the EGPf crystal. International Union of Crystallography 2014-06-18 /pmc/articles/PMC4089524/ /pubmed/25005081 http://dx.doi.org/10.1107/S2053230X14010930 Text en © Kataoka & Ishikawa 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Structural Communications
Kataoka, Misumi
Ishikawa, Kazuhiko
A new crystal form of a hyperthermophilic endocellulase
title A new crystal form of a hyperthermophilic endocellulase
title_full A new crystal form of a hyperthermophilic endocellulase
title_fullStr A new crystal form of a hyperthermophilic endocellulase
title_full_unstemmed A new crystal form of a hyperthermophilic endocellulase
title_short A new crystal form of a hyperthermophilic endocellulase
title_sort new crystal form of a hyperthermophilic endocellulase
topic Structural Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089524/
https://www.ncbi.nlm.nih.gov/pubmed/25005081
http://dx.doi.org/10.1107/S2053230X14010930
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