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A new crystal form of a hyperthermophilic endocellulase
The hyperthermophilic glycoside hydrolase family endocellulase 12 from the archaeon Pyrococcus furiosus (EGPf; Gene ID PF0854; EC 3.2.1.4) catalyzes the hydrolytic cleavage of the β-1,4-glucosidic linkage in β-glucan in lignocellulose biomass. A crystal of EGPf was previously prepared at pH 9.0 and...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089524/ https://www.ncbi.nlm.nih.gov/pubmed/25005081 http://dx.doi.org/10.1107/S2053230X14010930 |
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author | Kataoka, Misumi Ishikawa, Kazuhiko |
author_facet | Kataoka, Misumi Ishikawa, Kazuhiko |
author_sort | Kataoka, Misumi |
collection | PubMed |
description | The hyperthermophilic glycoside hydrolase family endocellulase 12 from the archaeon Pyrococcus furiosus (EGPf; Gene ID PF0854; EC 3.2.1.4) catalyzes the hydrolytic cleavage of the β-1,4-glucosidic linkage in β-glucan in lignocellulose biomass. A crystal of EGPf was previously prepared at pH 9.0 and its structure was determined at an atomic resolution of 1.07 Å. This article reports the crystallization of EGPf at the more physiologically relevant pH of 5.5. Structure determination showed that this new crystal form has the symmetry of space group C2. Two molecules of the enzyme are observed in the asymmetric unit. Crystal packing is weak at pH 5.5 owing to two flexible interfaces between symmetry-related molecules. Comparison of the EGPf structures obtained at pH 9.0 and pH 5.5 reveals a significant conformational difference at the active centre and in the surface loops. The interfaces in the vicinity of the flexible surface loops impact the quality of the EGPf crystal. |
format | Online Article Text |
id | pubmed-4089524 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-40895242014-07-16 A new crystal form of a hyperthermophilic endocellulase Kataoka, Misumi Ishikawa, Kazuhiko Acta Crystallogr F Struct Biol Commun Structural Communications The hyperthermophilic glycoside hydrolase family endocellulase 12 from the archaeon Pyrococcus furiosus (EGPf; Gene ID PF0854; EC 3.2.1.4) catalyzes the hydrolytic cleavage of the β-1,4-glucosidic linkage in β-glucan in lignocellulose biomass. A crystal of EGPf was previously prepared at pH 9.0 and its structure was determined at an atomic resolution of 1.07 Å. This article reports the crystallization of EGPf at the more physiologically relevant pH of 5.5. Structure determination showed that this new crystal form has the symmetry of space group C2. Two molecules of the enzyme are observed in the asymmetric unit. Crystal packing is weak at pH 5.5 owing to two flexible interfaces between symmetry-related molecules. Comparison of the EGPf structures obtained at pH 9.0 and pH 5.5 reveals a significant conformational difference at the active centre and in the surface loops. The interfaces in the vicinity of the flexible surface loops impact the quality of the EGPf crystal. International Union of Crystallography 2014-06-18 /pmc/articles/PMC4089524/ /pubmed/25005081 http://dx.doi.org/10.1107/S2053230X14010930 Text en © Kataoka & Ishikawa 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Structural Communications Kataoka, Misumi Ishikawa, Kazuhiko A new crystal form of a hyperthermophilic endocellulase |
title | A new crystal form of a hyperthermophilic endocellulase |
title_full | A new crystal form of a hyperthermophilic endocellulase |
title_fullStr | A new crystal form of a hyperthermophilic endocellulase |
title_full_unstemmed | A new crystal form of a hyperthermophilic endocellulase |
title_short | A new crystal form of a hyperthermophilic endocellulase |
title_sort | new crystal form of a hyperthermophilic endocellulase |
topic | Structural Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089524/ https://www.ncbi.nlm.nih.gov/pubmed/25005081 http://dx.doi.org/10.1107/S2053230X14010930 |
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