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Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut

Ultrasound segmentation is a challenging problem due to the inherent speckle and some artifacts like shadows, attenuation and signal dropout. Existing methods need to include strong priors like shape priors or analytical intensity models to succeed in the segmentation. However, such priors tend to l...

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Autores principales: Ciurte, Anca, Bresson, Xavier, Cuisenaire, Olivier, Houhou, Nawal, Nedevschi, Sergiu, Thiran, Jean-Philippe, Cuadra, Meritxell Bach
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091944/
https://www.ncbi.nlm.nih.gov/pubmed/25010530
http://dx.doi.org/10.1371/journal.pone.0100972
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author Ciurte, Anca
Bresson, Xavier
Cuisenaire, Olivier
Houhou, Nawal
Nedevschi, Sergiu
Thiran, Jean-Philippe
Cuadra, Meritxell Bach
author_facet Ciurte, Anca
Bresson, Xavier
Cuisenaire, Olivier
Houhou, Nawal
Nedevschi, Sergiu
Thiran, Jean-Philippe
Cuadra, Meritxell Bach
author_sort Ciurte, Anca
collection PubMed
description Ultrasound segmentation is a challenging problem due to the inherent speckle and some artifacts like shadows, attenuation and signal dropout. Existing methods need to include strong priors like shape priors or analytical intensity models to succeed in the segmentation. However, such priors tend to limit these methods to a specific target or imaging settings, and they are not always applicable to pathological cases. This work introduces a semi-supervised segmentation framework for ultrasound imaging that alleviates the limitation of fully automatic segmentation, that is, it is applicable to any kind of target and imaging settings. Our methodology uses a graph of image patches to represent the ultrasound image and user-assisted initialization with labels, which acts as soft priors. The segmentation problem is formulated as a continuous minimum cut problem and solved with an efficient optimization algorithm. We validate our segmentation framework on clinical ultrasound imaging (prostate, fetus, and tumors of the liver and eye). We obtain high similarity agreement with the ground truth provided by medical expert delineations in all applications (94% DICE values in average) and the proposed algorithm performs favorably with the literature.
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spelling pubmed-40919442014-07-18 Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut Ciurte, Anca Bresson, Xavier Cuisenaire, Olivier Houhou, Nawal Nedevschi, Sergiu Thiran, Jean-Philippe Cuadra, Meritxell Bach PLoS One Research Article Ultrasound segmentation is a challenging problem due to the inherent speckle and some artifacts like shadows, attenuation and signal dropout. Existing methods need to include strong priors like shape priors or analytical intensity models to succeed in the segmentation. However, such priors tend to limit these methods to a specific target or imaging settings, and they are not always applicable to pathological cases. This work introduces a semi-supervised segmentation framework for ultrasound imaging that alleviates the limitation of fully automatic segmentation, that is, it is applicable to any kind of target and imaging settings. Our methodology uses a graph of image patches to represent the ultrasound image and user-assisted initialization with labels, which acts as soft priors. The segmentation problem is formulated as a continuous minimum cut problem and solved with an efficient optimization algorithm. We validate our segmentation framework on clinical ultrasound imaging (prostate, fetus, and tumors of the liver and eye). We obtain high similarity agreement with the ground truth provided by medical expert delineations in all applications (94% DICE values in average) and the proposed algorithm performs favorably with the literature. Public Library of Science 2014-07-10 /pmc/articles/PMC4091944/ /pubmed/25010530 http://dx.doi.org/10.1371/journal.pone.0100972 Text en © 2014 Ciurte et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Ciurte, Anca
Bresson, Xavier
Cuisenaire, Olivier
Houhou, Nawal
Nedevschi, Sergiu
Thiran, Jean-Philippe
Cuadra, Meritxell Bach
Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut
title Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut
title_full Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut
title_fullStr Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut
title_full_unstemmed Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut
title_short Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut
title_sort semi-supervised segmentation of ultrasound images based on patch representation and continuous min cut
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091944/
https://www.ncbi.nlm.nih.gov/pubmed/25010530
http://dx.doi.org/10.1371/journal.pone.0100972
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