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Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh

India possesses a total buffalo population of 105 million out of which 26.1% inhabit Uttar Pradesh. The buffalo of Uttar Pradesh are described as nondescript or local buffaloes. Currently, there is no report about the genetic diversity, phylogenetic relationship and matrilineal genetic structure of...

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Detalles Bibliográficos
Autores principales: Joshi, Jyoti, Salar, R. K., Banerjee, Priyanka, S, Upasna, Tantia, M. S., Vijh, R. K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Asian-Australasian Association of Animal Production Societies (AAAP) and Korean Society of Animal Science and Technology (KSAST) 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4093408/
https://www.ncbi.nlm.nih.gov/pubmed/25049904
http://dx.doi.org/10.5713/ajas.2012.12669
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author Joshi, Jyoti
Salar, R. K.
Banerjee, Priyanka
S, Upasna
Tantia, M. S.
Vijh, R. K.
author_facet Joshi, Jyoti
Salar, R. K.
Banerjee, Priyanka
S, Upasna
Tantia, M. S.
Vijh, R. K.
author_sort Joshi, Jyoti
collection PubMed
description India possesses a total buffalo population of 105 million out of which 26.1% inhabit Uttar Pradesh. The buffalo of Uttar Pradesh are described as nondescript or local buffaloes. Currently, there is no report about the genetic diversity, phylogenetic relationship and matrilineal genetic structure of these buffaloes. To determine the origin and genetic diversity of UP buffaloes, we sequenced and analysed the mitochondrial DNA D-loop sequences in 259 samples from entire Uttar Pradesh. One hundred nine haplotypes were identified in UP buffaloes that were defined by 96 polymorphic sites. We implemented neutrality tests to assess signatures of recent historical demographic events like Tajima’s D test and Fu’s Fs test. The phylogenetic studies revealed that there was no geographic differentiation and UP buffaloes had a single maternal lineage while buffaloes of Eastern UP were distinctive from rest of the UP buffaloes.
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spelling pubmed-40934082014-07-21 Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh Joshi, Jyoti Salar, R. K. Banerjee, Priyanka S, Upasna Tantia, M. S. Vijh, R. K. Asian-Australas J Anim Sci Article India possesses a total buffalo population of 105 million out of which 26.1% inhabit Uttar Pradesh. The buffalo of Uttar Pradesh are described as nondescript or local buffaloes. Currently, there is no report about the genetic diversity, phylogenetic relationship and matrilineal genetic structure of these buffaloes. To determine the origin and genetic diversity of UP buffaloes, we sequenced and analysed the mitochondrial DNA D-loop sequences in 259 samples from entire Uttar Pradesh. One hundred nine haplotypes were identified in UP buffaloes that were defined by 96 polymorphic sites. We implemented neutrality tests to assess signatures of recent historical demographic events like Tajima’s D test and Fu’s Fs test. The phylogenetic studies revealed that there was no geographic differentiation and UP buffaloes had a single maternal lineage while buffaloes of Eastern UP were distinctive from rest of the UP buffaloes. Asian-Australasian Association of Animal Production Societies (AAAP) and Korean Society of Animal Science and Technology (KSAST) 2013-09 /pmc/articles/PMC4093408/ /pubmed/25049904 http://dx.doi.org/10.5713/ajas.2012.12669 Text en Copyright © 2013 by Asian-Australasian Journal of Animal Sciences This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License http://creativecommons.org/licenses/by-nc/3.0/ which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Article
Joshi, Jyoti
Salar, R. K.
Banerjee, Priyanka
S, Upasna
Tantia, M. S.
Vijh, R. K.
Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh
title Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh
title_full Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh
title_fullStr Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh
title_full_unstemmed Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh
title_short Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh
title_sort genetic variation and phylogenetic relationships of indian buffaloes of uttar pradesh
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4093408/
https://www.ncbi.nlm.nih.gov/pubmed/25049904
http://dx.doi.org/10.5713/ajas.2012.12669
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