Cargando…

Characterization of bacterial community shift in human Ulcerative Colitis patients revealed by Illumina based 16S rRNA gene amplicon sequencing

BACKGROUND: The healthy human intestine is represented by the presence of bacterial communities predominantly belonging to obligate anaerobes; however disparity and dysanaerobiosis in intestinal microflora may lead to the progression of ulcerative colitis (UC). The foremost aim of this study is to c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Walujkar, Sandeep A, Dhotre, Dhiraj P, Marathe, Nachiket P, Lawate, Parimal S, Bharadwaj, Renu S, Shouche, Yogesh S
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4094692/ https://www.ncbi.nlm.nih.gov/pubmed/25018784 http://dx.doi.org/10.1186/1757-4749-6-22

Ejemplares similares

Draft Genome Sequence of Methylophaga lonarensis MPL(T), a Haloalkaliphilic (Non-Methane-Utilizing) Methylotroph
por: Shetty, Sudarshan A., et al.
Publicado: (2013)

Benchmarking of 16S rRNA gene databases using known strain sequences
por: Dixit, Kunal, et al.
Publicado: (2021)

A Treatment Plant Receiving Waste Water from Multiple Bulk Drug Manufacturers Is a Reservoir for Highly Multi-Drug Resistant Integron-Bearing Bacteria
por: Marathe, Nachiket P., et al.
Publicado: (2013)

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys
por: Nelson, Michael C., et al.
Publicado: (2014)

Potential of Health and Demographic Surveillance System in Asthma and Chronic Obstructive Pulmonary Disease Microbiome Research
por: Agarwal, Dhiraj, et al.
Publicado: (2017)

Opportunities and challenges for gut microbiome studies in the Indian population
por: Shetty, Sudarshan Anand, et al.
Publicado: (2013)

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing
por: Parikh, Hardik I., et al.
Publicado: (2016)

Draft genome of Ochrobactrum intermedium strain M86 isolated from non-ulcer dyspeptic individual from India
por: Kulkarni, Girish, et al.
Publicado: (2013)

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform
por: Sinclair, Lucas, et al.
Publicado: (2015)

Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock
por: Paul, Dhiraj, et al.
Publicado: (2016)

Changes in human gut flora with age: an Indian familial study
por: Marathe, Nachiket, et al.
Publicado: (2012)

Concordance between culture, Molecular Culture and Illumina 16S rRNA gene amplicon sequencing of bone and ulcer bed biopsies in people with diabetic foot osteomyelitis
por: Gramberg, Meryl Cinzía Tila Tamara, et al.
Publicado: (2023)

Limited Bacterial Diversity within a Treatment Plant Receiving Antibiotic-Containing Waste from Bulk Drug Production
por: Marathe, Nachiket P., et al.
Publicado: (2016)

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences
por: Ong, Swee Hoe, et al.
Publicado: (2013)

Whole-Genome Sequencing of the Tropical Marine Bacterium Nocardiopsis dassonvillei NCIM 5124, Containing the Ectoine Biosynthesis Gene Cluster ectABC
por: Kadam, Pratik, et al.
Publicado: (2022)

Comparative Genome Analysis of Megasphaera sp. Reveals Niche Specialization and Its Potential Role in the Human Gut
por: Shetty, Sudarshan Anand, et al.
Publicado: (2013)

Generation, annotation, and analysis of ESTs from midgut tissue of adult female Anopheles stephensi mosquitoes
por: Patil, Deepak P, et al.
Publicado: (2009)

In vitro antibacterial activity of Tabernaemontana alternifolia (Roxb) stem bark aqueous extracts against clinical isolates of methicillin resistant Staphylococcus aureus
por: Marathe, Nachiket P, et al.
Publicado: (2013)

Insights into Diversity and Imputed Metabolic Potential of Bacterial Communities in the Continental Shelf of Agatti Island
por: Kumbhare, Shreyas V., et al.
Publicado: (2015)

Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains
por: Ghattargi, Vikas C., et al.
Publicado: (2018)

Illumina sequencing of 15 deafness genes using fragmented amplicons
por: Van Nieuwerburgh, Filip, et al.
Publicado: (2014)

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform
por: Wen, Chongqing, et al.
Publicado: (2017)

IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data
por: Mysara, Mohamed, et al.
Publicado: (2016)

A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform
por: de Muinck, Eric J., et al.
Publicado: (2017)

Ulcerative Colitis: Shifting Sands
por: D’Haens, Geert R. A. M., et al.
Publicado: (2019)

Microbial community structure of two freshwater sponges using Illumina MiSeq sequencing revealed high microbial diversity
por: Gaikwad, Swapnil, et al.
Publicado: (2016)

Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix)
por: Glenn, Travis C., et al.
Publicado: (2019)

DADA2: High resolution sample inference from Illumina amplicon data
por: Callahan, Benjamin J, et al.
Publicado: (2016)

Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India
por: Johnning, Anna, et al.
Publicado: (2015)

Genome sequencing of multidrug resistant novel Clostridium sp. BL8 reveals its potential for pathogenicity
por: Marathe, Nachiket Prakash, et al.
Publicado: (2014)

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
por: Bokulich, Nicholas A., et al.
Publicado: (2012)

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
por: Schirmer, Melanie, et al.
Publicado: (2015)

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis
por: Wu, Liyou, et al.
Publicado: (2015)

A validation of Illumina EPIC array system with bisulfite-based amplicon sequencing
por: Noble, Alexandra J., et al.
Publicado: (2021)

A simple, single-tube overlapping amplicon-targeted Illumina sequencing assay
por: Limberis, Jason D., et al.
Publicado: (2023)

Prevalence of irritable bowel syndrome and metabolic syndrome among young adults in an annual health check‐up setting
por: Javadekar, Narendra S, et al.
Publicado: (2021)

Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing
por: Jünemann, Sebastian, et al.
Publicado: (2012)

Microbiome Shift, Diversity, and Overabundance of Opportunistic Pathogens in Bovine Digital Dermatitis Revealed by 16S rRNA Amplicon Sequencing
por: Espiritu, Hector M., et al.
Publicado: (2020)

Illumina Amplicon Sequencing of 16S rRNA Tag Reveals Bacterial Community Development in the Rhizosphere of Apple Nurseries at a Replant Disease Site and a New Planting Site
por: Sun, Jian, et al.
Publicado: (2014)

Processing human urine and ureteral stents for 16S rRNA amplicon sequencing
por: Al, Kait F., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_0ahkv90mg07stgqmu19umm9253