Cargando…

Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics

DNA mutations are the cause of many human diseases and they are the reason for natural differences among individuals by affecting the structure, function, interactions, and other properties of DNA and expressed proteins. The ability to predict whether a given mutation is disease-causing or harmless...

Descripción completa

Detalles Bibliográficos
Autores principales: Kucukkal, Tugba G., Yang, Ye, Chapman, Susan C., Cao, Weiguo, Alexov, Emil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100115/
https://www.ncbi.nlm.nih.gov/pubmed/24886813
http://dx.doi.org/10.3390/ijms15069670
_version_ 1782326614752755712
author Kucukkal, Tugba G.
Yang, Ye
Chapman, Susan C.
Cao, Weiguo
Alexov, Emil
author_facet Kucukkal, Tugba G.
Yang, Ye
Chapman, Susan C.
Cao, Weiguo
Alexov, Emil
author_sort Kucukkal, Tugba G.
collection PubMed
description DNA mutations are the cause of many human diseases and they are the reason for natural differences among individuals by affecting the structure, function, interactions, and other properties of DNA and expressed proteins. The ability to predict whether a given mutation is disease-causing or harmless is of great importance for the early detection of patients with a high risk of developing a particular disease and would pave the way for personalized medicine and diagnostics. Here we review existing methods and techniques to study and predict the effects of DNA mutations from three different perspectives: in silico, in vitro and in vivo. It is emphasized that the problem is complicated and successful detection of a pathogenic mutation frequently requires a combination of several methods and a knowledge of the biological phenomena associated with the corresponding macromolecules.
format Online
Article
Text
id pubmed-4100115
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-41001152014-07-16 Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics Kucukkal, Tugba G. Yang, Ye Chapman, Susan C. Cao, Weiguo Alexov, Emil Int J Mol Sci Review DNA mutations are the cause of many human diseases and they are the reason for natural differences among individuals by affecting the structure, function, interactions, and other properties of DNA and expressed proteins. The ability to predict whether a given mutation is disease-causing or harmless is of great importance for the early detection of patients with a high risk of developing a particular disease and would pave the way for personalized medicine and diagnostics. Here we review existing methods and techniques to study and predict the effects of DNA mutations from three different perspectives: in silico, in vitro and in vivo. It is emphasized that the problem is complicated and successful detection of a pathogenic mutation frequently requires a combination of several methods and a knowledge of the biological phenomena associated with the corresponding macromolecules. MDPI 2014-05-30 /pmc/articles/PMC4100115/ /pubmed/24886813 http://dx.doi.org/10.3390/ijms15069670 Text en © 2014 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Review
Kucukkal, Tugba G.
Yang, Ye
Chapman, Susan C.
Cao, Weiguo
Alexov, Emil
Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics
title Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics
title_full Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics
title_fullStr Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics
title_full_unstemmed Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics
title_short Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics
title_sort computational and experimental approaches to reveal the effects of single nucleotide polymorphisms with respect to disease diagnostics
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100115/
https://www.ncbi.nlm.nih.gov/pubmed/24886813
http://dx.doi.org/10.3390/ijms15069670
work_keys_str_mv AT kucukkaltugbag computationalandexperimentalapproachestorevealtheeffectsofsinglenucleotidepolymorphismswithrespecttodiseasediagnostics
AT yangye computationalandexperimentalapproachestorevealtheeffectsofsinglenucleotidepolymorphismswithrespecttodiseasediagnostics
AT chapmansusanc computationalandexperimentalapproachestorevealtheeffectsofsinglenucleotidepolymorphismswithrespecttodiseasediagnostics
AT caoweiguo computationalandexperimentalapproachestorevealtheeffectsofsinglenucleotidepolymorphismswithrespecttodiseasediagnostics
AT alexovemil computationalandexperimentalapproachestorevealtheeffectsofsinglenucleotidepolymorphismswithrespecttodiseasediagnostics