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Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images

This study aims to develop content-based image retrieval (CBIR) system for the retrieval of T1-weighted contrast-enhanced MR (CE-MR) images of brain tumors. When a tumor region is fed to the CBIR system as a query, the system attempts to retrieve tumors of the same pathological category. The bag-of-...

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Autores principales: Huang, Meiyan, Yang, Wei, Wu, Yao, Jiang, Jun, Gao, Yang, Chen, Yang, Feng, Qianjin, Chen, Wufan, Lu, Zhentai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100908/
https://www.ncbi.nlm.nih.gov/pubmed/25028970
http://dx.doi.org/10.1371/journal.pone.0102754
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author Huang, Meiyan
Yang, Wei
Wu, Yao
Jiang, Jun
Gao, Yang
Chen, Yang
Feng, Qianjin
Chen, Wufan
Lu, Zhentai
author_facet Huang, Meiyan
Yang, Wei
Wu, Yao
Jiang, Jun
Gao, Yang
Chen, Yang
Feng, Qianjin
Chen, Wufan
Lu, Zhentai
author_sort Huang, Meiyan
collection PubMed
description This study aims to develop content-based image retrieval (CBIR) system for the retrieval of T1-weighted contrast-enhanced MR (CE-MR) images of brain tumors. When a tumor region is fed to the CBIR system as a query, the system attempts to retrieve tumors of the same pathological category. The bag-of-visual-words (BoVW) model with partition learning is incorporated into the system to extract informative features for representing the image contents. Furthermore, a distance metric learning algorithm called the Rank Error-based Metric Learning (REML) is proposed to reduce the semantic gap between low-level visual features and high-level semantic concepts. The effectiveness of the proposed method is evaluated on a brain T1-weighted CE-MR dataset with three types of brain tumors (i.e., meningioma, glioma, and pituitary tumor). Using the BoVW model with partition learning, the mean average precision (mAP) of retrieval increases beyond 4.6% with the learned distance metrics compared with the spatial pyramid BoVW method. The distance metric learned by REML significantly outperforms three other existing distance metric learning methods in terms of mAP. The mAP of the CBIR system is as high as 91.8% using the proposed method, and the precision can reach 93.1% when the top 10 images are returned by the system. These preliminary results demonstrate that the proposed method is effective and feasible for the retrieval of brain tumors in T1-weighted CE-MR Images.
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spelling pubmed-41009082014-07-18 Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images Huang, Meiyan Yang, Wei Wu, Yao Jiang, Jun Gao, Yang Chen, Yang Feng, Qianjin Chen, Wufan Lu, Zhentai PLoS One Research Article This study aims to develop content-based image retrieval (CBIR) system for the retrieval of T1-weighted contrast-enhanced MR (CE-MR) images of brain tumors. When a tumor region is fed to the CBIR system as a query, the system attempts to retrieve tumors of the same pathological category. The bag-of-visual-words (BoVW) model with partition learning is incorporated into the system to extract informative features for representing the image contents. Furthermore, a distance metric learning algorithm called the Rank Error-based Metric Learning (REML) is proposed to reduce the semantic gap between low-level visual features and high-level semantic concepts. The effectiveness of the proposed method is evaluated on a brain T1-weighted CE-MR dataset with three types of brain tumors (i.e., meningioma, glioma, and pituitary tumor). Using the BoVW model with partition learning, the mean average precision (mAP) of retrieval increases beyond 4.6% with the learned distance metrics compared with the spatial pyramid BoVW method. The distance metric learned by REML significantly outperforms three other existing distance metric learning methods in terms of mAP. The mAP of the CBIR system is as high as 91.8% using the proposed method, and the precision can reach 93.1% when the top 10 images are returned by the system. These preliminary results demonstrate that the proposed method is effective and feasible for the retrieval of brain tumors in T1-weighted CE-MR Images. Public Library of Science 2014-07-16 /pmc/articles/PMC4100908/ /pubmed/25028970 http://dx.doi.org/10.1371/journal.pone.0102754 Text en © 2014 Huang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Huang, Meiyan
Yang, Wei
Wu, Yao
Jiang, Jun
Gao, Yang
Chen, Yang
Feng, Qianjin
Chen, Wufan
Lu, Zhentai
Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images
title Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images
title_full Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images
title_fullStr Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images
title_full_unstemmed Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images
title_short Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images
title_sort content-based image retrieval using spatial layout information in brain tumor t1-weighted contrast-enhanced mr images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100908/
https://www.ncbi.nlm.nih.gov/pubmed/25028970
http://dx.doi.org/10.1371/journal.pone.0102754
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