Cargando…

Sparse Data Analysis Strategy for Neural Spike Classification

Many of the multichannel extracellular recordings of neural activity consist of attempting to sort spikes on the basis of shared characteristics with some feature detection techniques. Then spikes can be sorted into distinct clusters. There are in general two main statistical issues: firstly, spike...

Descripción completa

Detalles Bibliográficos
Autores principales: Vigneron, Vincent, Chen, Hsin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101971/
https://www.ncbi.nlm.nih.gov/pubmed/25101122
http://dx.doi.org/10.1155/2014/757068
_version_ 1782480987052048384
author Vigneron, Vincent
Chen, Hsin
author_facet Vigneron, Vincent
Chen, Hsin
author_sort Vigneron, Vincent
collection PubMed
description Many of the multichannel extracellular recordings of neural activity consist of attempting to sort spikes on the basis of shared characteristics with some feature detection techniques. Then spikes can be sorted into distinct clusters. There are in general two main statistical issues: firstly, spike sorting can result in well-sorted units, but by with no means one can be sure that one is dealing with single units due to the number of neurons adjacent to the recording electrode. Secondly, the waveform dimensionality is reduced in a small subset of discriminating features. This shortening dimension effort was introduced as an aid to visualization and manual clustering, but also to reduce the computational complexity in automatic classification. We introduce a metric based on common neighbourhood to introduce sparsity in the dataset and separate data into more homogeneous subgroups. The approach is particularly well suited for clustering when the individual clusters are elongated (that is nonspherical). In addition it does need not to select the number of clusters, it is very efficient to visualize clusters in a dataset, it is robust to noise, it can handle imbalanced data, and it is fully automatic and deterministic.
format Online
Article
Text
id pubmed-4101971
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Hindawi Publishing Corporation
record_format MEDLINE/PubMed
spelling pubmed-41019712014-08-06 Sparse Data Analysis Strategy for Neural Spike Classification Vigneron, Vincent Chen, Hsin Comput Intell Neurosci Research Article Many of the multichannel extracellular recordings of neural activity consist of attempting to sort spikes on the basis of shared characteristics with some feature detection techniques. Then spikes can be sorted into distinct clusters. There are in general two main statistical issues: firstly, spike sorting can result in well-sorted units, but by with no means one can be sure that one is dealing with single units due to the number of neurons adjacent to the recording electrode. Secondly, the waveform dimensionality is reduced in a small subset of discriminating features. This shortening dimension effort was introduced as an aid to visualization and manual clustering, but also to reduce the computational complexity in automatic classification. We introduce a metric based on common neighbourhood to introduce sparsity in the dataset and separate data into more homogeneous subgroups. The approach is particularly well suited for clustering when the individual clusters are elongated (that is nonspherical). In addition it does need not to select the number of clusters, it is very efficient to visualize clusters in a dataset, it is robust to noise, it can handle imbalanced data, and it is fully automatic and deterministic. Hindawi Publishing Corporation 2014 2014-07-02 /pmc/articles/PMC4101971/ /pubmed/25101122 http://dx.doi.org/10.1155/2014/757068 Text en Copyright © 2014 V. Vigneron and H. Chen. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Vigneron, Vincent
Chen, Hsin
Sparse Data Analysis Strategy for Neural Spike Classification
title Sparse Data Analysis Strategy for Neural Spike Classification
title_full Sparse Data Analysis Strategy for Neural Spike Classification
title_fullStr Sparse Data Analysis Strategy for Neural Spike Classification
title_full_unstemmed Sparse Data Analysis Strategy for Neural Spike Classification
title_short Sparse Data Analysis Strategy for Neural Spike Classification
title_sort sparse data analysis strategy for neural spike classification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101971/
https://www.ncbi.nlm.nih.gov/pubmed/25101122
http://dx.doi.org/10.1155/2014/757068
work_keys_str_mv AT vigneronvincent sparsedataanalysisstrategyforneuralspikeclassification
AT chenhsin sparsedataanalysisstrategyforneuralspikeclassification