Cargando…

Detecting Communities Based on Network Topology

Network methods have had profound influence in many domains and disciplines in the past decade. Community structure is a very important property of complex networks, but the accurate definition of a community remains an open problem. Here we defined community based on three properties, and then prop...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Wei, Pellegrini, Matteo, Wang, Xiaofan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102921/
https://www.ncbi.nlm.nih.gov/pubmed/25033828
http://dx.doi.org/10.1038/srep05739
_version_ 1782327090075402240
author Liu, Wei
Pellegrini, Matteo
Wang, Xiaofan
author_facet Liu, Wei
Pellegrini, Matteo
Wang, Xiaofan
author_sort Liu, Wei
collection PubMed
description Network methods have had profound influence in many domains and disciplines in the past decade. Community structure is a very important property of complex networks, but the accurate definition of a community remains an open problem. Here we defined community based on three properties, and then propose a simple and novel framework to detect communities based on network topology. We analyzed 16 different types of networks, and compared our partitions with Infomap, LPA, Fastgreedy and Walktrap, which are popular algorithms for community detection. Most of the partitions generated using our approach compare favorably to those generated by these other algorithms. Furthermore, we define overlapping nodes that combine community structure with shortest paths. We also analyzed the E. Coli. transcriptional regulatory network in detail, and identified modules with strong functional coherence.
format Online
Article
Text
id pubmed-4102921
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-41029212014-07-21 Detecting Communities Based on Network Topology Liu, Wei Pellegrini, Matteo Wang, Xiaofan Sci Rep Article Network methods have had profound influence in many domains and disciplines in the past decade. Community structure is a very important property of complex networks, but the accurate definition of a community remains an open problem. Here we defined community based on three properties, and then propose a simple and novel framework to detect communities based on network topology. We analyzed 16 different types of networks, and compared our partitions with Infomap, LPA, Fastgreedy and Walktrap, which are popular algorithms for community detection. Most of the partitions generated using our approach compare favorably to those generated by these other algorithms. Furthermore, we define overlapping nodes that combine community structure with shortest paths. We also analyzed the E. Coli. transcriptional regulatory network in detail, and identified modules with strong functional coherence. Nature Publishing Group 2014-07-18 /pmc/articles/PMC4102921/ /pubmed/25033828 http://dx.doi.org/10.1038/srep05739 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Liu, Wei
Pellegrini, Matteo
Wang, Xiaofan
Detecting Communities Based on Network Topology
title Detecting Communities Based on Network Topology
title_full Detecting Communities Based on Network Topology
title_fullStr Detecting Communities Based on Network Topology
title_full_unstemmed Detecting Communities Based on Network Topology
title_short Detecting Communities Based on Network Topology
title_sort detecting communities based on network topology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102921/
https://www.ncbi.nlm.nih.gov/pubmed/25033828
http://dx.doi.org/10.1038/srep05739
work_keys_str_mv AT liuwei detectingcommunitiesbasedonnetworktopology
AT pellegrinimatteo detectingcommunitiesbasedonnetworktopology
AT wangxiaofan detectingcommunitiesbasedonnetworktopology