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Detecting Communities Based on Network Topology
Network methods have had profound influence in many domains and disciplines in the past decade. Community structure is a very important property of complex networks, but the accurate definition of a community remains an open problem. Here we defined community based on three properties, and then prop...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102921/ https://www.ncbi.nlm.nih.gov/pubmed/25033828 http://dx.doi.org/10.1038/srep05739 |
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author | Liu, Wei Pellegrini, Matteo Wang, Xiaofan |
author_facet | Liu, Wei Pellegrini, Matteo Wang, Xiaofan |
author_sort | Liu, Wei |
collection | PubMed |
description | Network methods have had profound influence in many domains and disciplines in the past decade. Community structure is a very important property of complex networks, but the accurate definition of a community remains an open problem. Here we defined community based on three properties, and then propose a simple and novel framework to detect communities based on network topology. We analyzed 16 different types of networks, and compared our partitions with Infomap, LPA, Fastgreedy and Walktrap, which are popular algorithms for community detection. Most of the partitions generated using our approach compare favorably to those generated by these other algorithms. Furthermore, we define overlapping nodes that combine community structure with shortest paths. We also analyzed the E. Coli. transcriptional regulatory network in detail, and identified modules with strong functional coherence. |
format | Online Article Text |
id | pubmed-4102921 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-41029212014-07-21 Detecting Communities Based on Network Topology Liu, Wei Pellegrini, Matteo Wang, Xiaofan Sci Rep Article Network methods have had profound influence in many domains and disciplines in the past decade. Community structure is a very important property of complex networks, but the accurate definition of a community remains an open problem. Here we defined community based on three properties, and then propose a simple and novel framework to detect communities based on network topology. We analyzed 16 different types of networks, and compared our partitions with Infomap, LPA, Fastgreedy and Walktrap, which are popular algorithms for community detection. Most of the partitions generated using our approach compare favorably to those generated by these other algorithms. Furthermore, we define overlapping nodes that combine community structure with shortest paths. We also analyzed the E. Coli. transcriptional regulatory network in detail, and identified modules with strong functional coherence. Nature Publishing Group 2014-07-18 /pmc/articles/PMC4102921/ /pubmed/25033828 http://dx.doi.org/10.1038/srep05739 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Liu, Wei Pellegrini, Matteo Wang, Xiaofan Detecting Communities Based on Network Topology |
title | Detecting Communities Based on Network Topology |
title_full | Detecting Communities Based on Network Topology |
title_fullStr | Detecting Communities Based on Network Topology |
title_full_unstemmed | Detecting Communities Based on Network Topology |
title_short | Detecting Communities Based on Network Topology |
title_sort | detecting communities based on network topology |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102921/ https://www.ncbi.nlm.nih.gov/pubmed/25033828 http://dx.doi.org/10.1038/srep05739 |
work_keys_str_mv | AT liuwei detectingcommunitiesbasedonnetworktopology AT pellegrinimatteo detectingcommunitiesbasedonnetworktopology AT wangxiaofan detectingcommunitiesbasedonnetworktopology |