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Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1)

• Premise of the study: Vigna unguiculata is an economically important legume, and the complexity of its variability and evolution needs to be further understood. Based on publicly available databases, we developed chloroplast microsatellite primers to investigate genetic diversity within V. unguicu...

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Detalles Bibliográficos
Autores principales: Pan, Lei, Li, Yi, Guo, Rui, Wu, Hua, Hu, Zhihui, Chen, Chanyou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103102/
https://www.ncbi.nlm.nih.gov/pubmed/25202608
http://dx.doi.org/10.3732/apps.1300075
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author Pan, Lei
Li, Yi
Guo, Rui
Wu, Hua
Hu, Zhihui
Chen, Chanyou
author_facet Pan, Lei
Li, Yi
Guo, Rui
Wu, Hua
Hu, Zhihui
Chen, Chanyou
author_sort Pan, Lei
collection PubMed
description • Premise of the study: Vigna unguiculata is an economically important legume, and the complexity of its variability and evolution needs to be further understood. Based on publicly available databases, we developed chloroplast microsatellite primers to investigate genetic diversity within V. unguiculata and its related species Phaseolus vulgaris. • Methods and Results: Twelve polymorphic chloroplast microsatellite markers were developed and characterized in 62 V. unguiculata individuals. The number of alleles per locus varied between two and four, the unbiased haploid diversity per locus ranged from 0.123 to 0.497, and the polymorphism information content varied from 0.114 to 0.369. In cross-species amplifications, nine of these markers showed polymorphism in 29 P. vulgaris individuals. • Conclusions: The newly developed chloroplast microsatellite markers exhibit variation in V. unguiculata as well as their transferability in P. vulgaris. These markers can be used to investigate genetic diversity and evolution in V. unguiculata and P. vulgaris.
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spelling pubmed-41031022014-09-08 Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1) Pan, Lei Li, Yi Guo, Rui Wu, Hua Hu, Zhihui Chen, Chanyou Appl Plant Sci Primer Note • Premise of the study: Vigna unguiculata is an economically important legume, and the complexity of its variability and evolution needs to be further understood. Based on publicly available databases, we developed chloroplast microsatellite primers to investigate genetic diversity within V. unguiculata and its related species Phaseolus vulgaris. • Methods and Results: Twelve polymorphic chloroplast microsatellite markers were developed and characterized in 62 V. unguiculata individuals. The number of alleles per locus varied between two and four, the unbiased haploid diversity per locus ranged from 0.123 to 0.497, and the polymorphism information content varied from 0.114 to 0.369. In cross-species amplifications, nine of these markers showed polymorphism in 29 P. vulgaris individuals. • Conclusions: The newly developed chloroplast microsatellite markers exhibit variation in V. unguiculata as well as their transferability in P. vulgaris. These markers can be used to investigate genetic diversity and evolution in V. unguiculata and P. vulgaris. Botanical Society of America 2014-03-04 /pmc/articles/PMC4103102/ /pubmed/25202608 http://dx.doi.org/10.3732/apps.1300075 Text en © 2014 Pan et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Pan, Lei
Li, Yi
Guo, Rui
Wu, Hua
Hu, Zhihui
Chen, Chanyou
Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1)
title Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1)
title_full Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1)
title_fullStr Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1)
title_full_unstemmed Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1)
title_short Development of 12 chloroplast microsatellite markers in Vigna unguiculata (Fabaceae) and amplification in Phaseolus vulgaris(1)
title_sort development of 12 chloroplast microsatellite markers in vigna unguiculata (fabaceae) and amplification in phaseolus vulgaris(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103102/
https://www.ncbi.nlm.nih.gov/pubmed/25202608
http://dx.doi.org/10.3732/apps.1300075
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