Cargando…

Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)

• Premise of the study: Microsatellite primers were developed for the tree species Genipa americana (Rubiaceae) for further population genetic studies. • Methods and Results: We identified 144 clones containing 65 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer p...

Descripción completa

Detalles Bibliográficos
Autores principales: Manoel, Ricardo O., Freitas, Miguel L. M., Barreto, Mariana A., Moraes, Mário L. T., Souza, Anete P., Sebbenn, Alexandre M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103104/
https://www.ncbi.nlm.nih.gov/pubmed/25202610
http://dx.doi.org/10.3732/apps.1300084
_version_ 1782327112702623744
author Manoel, Ricardo O.
Freitas, Miguel L. M.
Barreto, Mariana A.
Moraes, Mário L. T.
Souza, Anete P.
Sebbenn, Alexandre M.
author_facet Manoel, Ricardo O.
Freitas, Miguel L. M.
Barreto, Mariana A.
Moraes, Mário L. T.
Souza, Anete P.
Sebbenn, Alexandre M.
author_sort Manoel, Ricardo O.
collection PubMed
description • Premise of the study: Microsatellite primers were developed for the tree species Genipa americana (Rubiaceae) for further population genetic studies. • Methods and Results: We identified 144 clones containing 65 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer pairs were developed for 32 microsatellite loci and validated in 40 individuals of two natural G. americana populations. Seventeen loci were polymorphic, revealing from three to seven alleles per locus. The observed and expected heterozygosities ranged from 0.24 to 1.00 and from 0.22 to 0.78, respectively. • Conclusions: The 17 primers identified as polymorphic loci are suitable to study the genetic diversity and structure, mating system, and gene flow in G. americana.
format Online
Article
Text
id pubmed-4103104
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-41031042014-09-08 Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) Manoel, Ricardo O. Freitas, Miguel L. M. Barreto, Mariana A. Moraes, Mário L. T. Souza, Anete P. Sebbenn, Alexandre M. Appl Plant Sci Primer Note • Premise of the study: Microsatellite primers were developed for the tree species Genipa americana (Rubiaceae) for further population genetic studies. • Methods and Results: We identified 144 clones containing 65 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer pairs were developed for 32 microsatellite loci and validated in 40 individuals of two natural G. americana populations. Seventeen loci were polymorphic, revealing from three to seven alleles per locus. The observed and expected heterozygosities ranged from 0.24 to 1.00 and from 0.22 to 0.78, respectively. • Conclusions: The 17 primers identified as polymorphic loci are suitable to study the genetic diversity and structure, mating system, and gene flow in G. americana. Botanical Society of America 2014-02-11 /pmc/articles/PMC4103104/ /pubmed/25202610 http://dx.doi.org/10.3732/apps.1300084 Text en © 2014 Manoel et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Manoel, Ricardo O.
Freitas, Miguel L. M.
Barreto, Mariana A.
Moraes, Mário L. T.
Souza, Anete P.
Sebbenn, Alexandre M.
Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)
title Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)
title_full Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)
title_fullStr Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)
title_full_unstemmed Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)
title_short Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)
title_sort development and characterization of 32 microsatellite loci in genipa americana (rubiaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103104/
https://www.ncbi.nlm.nih.gov/pubmed/25202610
http://dx.doi.org/10.3732/apps.1300084
work_keys_str_mv AT manoelricardoo developmentandcharacterizationof32microsatellitelociingenipaamericanarubiaceae1
AT freitasmiguellm developmentandcharacterizationof32microsatellitelociingenipaamericanarubiaceae1
AT barretomarianaa developmentandcharacterizationof32microsatellitelociingenipaamericanarubiaceae1
AT moraesmariolt developmentandcharacterizationof32microsatellitelociingenipaamericanarubiaceae1
AT souzaanetep developmentandcharacterizationof32microsatellitelociingenipaamericanarubiaceae1
AT sebbennalexandrem developmentandcharacterizationof32microsatellitelociingenipaamericanarubiaceae1