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Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1)
• Premise of the study: Microsatellite primers were developed for the tree species Genipa americana (Rubiaceae) for further population genetic studies. • Methods and Results: We identified 144 clones containing 65 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer p...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103104/ https://www.ncbi.nlm.nih.gov/pubmed/25202610 http://dx.doi.org/10.3732/apps.1300084 |
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author | Manoel, Ricardo O. Freitas, Miguel L. M. Barreto, Mariana A. Moraes, Mário L. T. Souza, Anete P. Sebbenn, Alexandre M. |
author_facet | Manoel, Ricardo O. Freitas, Miguel L. M. Barreto, Mariana A. Moraes, Mário L. T. Souza, Anete P. Sebbenn, Alexandre M. |
author_sort | Manoel, Ricardo O. |
collection | PubMed |
description | • Premise of the study: Microsatellite primers were developed for the tree species Genipa americana (Rubiaceae) for further population genetic studies. • Methods and Results: We identified 144 clones containing 65 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer pairs were developed for 32 microsatellite loci and validated in 40 individuals of two natural G. americana populations. Seventeen loci were polymorphic, revealing from three to seven alleles per locus. The observed and expected heterozygosities ranged from 0.24 to 1.00 and from 0.22 to 0.78, respectively. • Conclusions: The 17 primers identified as polymorphic loci are suitable to study the genetic diversity and structure, mating system, and gene flow in G. americana. |
format | Online Article Text |
id | pubmed-4103104 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41031042014-09-08 Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) Manoel, Ricardo O. Freitas, Miguel L. M. Barreto, Mariana A. Moraes, Mário L. T. Souza, Anete P. Sebbenn, Alexandre M. Appl Plant Sci Primer Note • Premise of the study: Microsatellite primers were developed for the tree species Genipa americana (Rubiaceae) for further population genetic studies. • Methods and Results: We identified 144 clones containing 65 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer pairs were developed for 32 microsatellite loci and validated in 40 individuals of two natural G. americana populations. Seventeen loci were polymorphic, revealing from three to seven alleles per locus. The observed and expected heterozygosities ranged from 0.24 to 1.00 and from 0.22 to 0.78, respectively. • Conclusions: The 17 primers identified as polymorphic loci are suitable to study the genetic diversity and structure, mating system, and gene flow in G. americana. Botanical Society of America 2014-02-11 /pmc/articles/PMC4103104/ /pubmed/25202610 http://dx.doi.org/10.3732/apps.1300084 Text en © 2014 Manoel et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Manoel, Ricardo O. Freitas, Miguel L. M. Barreto, Mariana A. Moraes, Mário L. T. Souza, Anete P. Sebbenn, Alexandre M. Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) |
title | Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) |
title_full | Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) |
title_fullStr | Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) |
title_full_unstemmed | Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) |
title_short | Development and characterization of 32 microsatellite loci in Genipa americana (Rubiaceae)(1) |
title_sort | development and characterization of 32 microsatellite loci in genipa americana (rubiaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103104/ https://www.ncbi.nlm.nih.gov/pubmed/25202610 http://dx.doi.org/10.3732/apps.1300084 |
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