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Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1)
• Premise of the study: Ten microsatellite markers were developed and characterized in a gynodioecious summer-deciduous shrub, Daphne jezoensis, to facilitate studies of the evolution of gynodioecy in the species. • Methods and Results: We used a next-generation sequencing approach with the Ion Pers...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103110/ https://www.ncbi.nlm.nih.gov/pubmed/25202624 http://dx.doi.org/10.3732/apps.1400001 |
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author | Kameyama, Yoshiaki Hirao, Akira S. |
author_facet | Kameyama, Yoshiaki Hirao, Akira S. |
author_sort | Kameyama, Yoshiaki |
collection | PubMed |
description | • Premise of the study: Ten microsatellite markers were developed and characterized in a gynodioecious summer-deciduous shrub, Daphne jezoensis, to facilitate studies of the evolution of gynodioecy in the species. • Methods and Results: We used a next-generation sequencing approach with the Ion Personal Genome Machine (PGM) system to identify and develop microsatellite markers with perfect di- and trinucleotide repeats. These markers were tested with 47 samples from two natural populations. The mean observed and expected heterozygosities per population ranged from 0.40 to 0.46 and 0.60 to 0.66, respectively. • Conclusions: The developed markers will be useful to study the mating system, gene flow, and population genetic structure of D. jezoensis. |
format | Online Article Text |
id | pubmed-4103110 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41031102014-09-08 Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1) Kameyama, Yoshiaki Hirao, Akira S. Appl Plant Sci Primer Note • Premise of the study: Ten microsatellite markers were developed and characterized in a gynodioecious summer-deciduous shrub, Daphne jezoensis, to facilitate studies of the evolution of gynodioecy in the species. • Methods and Results: We used a next-generation sequencing approach with the Ion Personal Genome Machine (PGM) system to identify and develop microsatellite markers with perfect di- and trinucleotide repeats. These markers were tested with 47 samples from two natural populations. The mean observed and expected heterozygosities per population ranged from 0.40 to 0.46 and 0.60 to 0.66, respectively. • Conclusions: The developed markers will be useful to study the mating system, gene flow, and population genetic structure of D. jezoensis. Botanical Society of America 2014-04-18 /pmc/articles/PMC4103110/ /pubmed/25202624 http://dx.doi.org/10.3732/apps.1400001 Text en © 2014 Kameyama and Hirao. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Kameyama, Yoshiaki Hirao, Akira S. Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1) |
title | Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1) |
title_full | Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1) |
title_fullStr | Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1) |
title_full_unstemmed | Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1) |
title_short | Development and evaluation of microsatellite markers for the gynodioecious shrub Daphne jezoensis (Thymelaeaceae)(1) |
title_sort | development and evaluation of microsatellite markers for the gynodioecious shrub daphne jezoensis (thymelaeaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103110/ https://www.ncbi.nlm.nih.gov/pubmed/25202624 http://dx.doi.org/10.3732/apps.1400001 |
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