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Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1)

• Premise of the study: Fourteen genomic microsatellite markers were developed and characterized in honey locust, Gleditsia triacanthos, using Illumina sequencing. Due to their high variability, these markers can be applied in analyses of genetic diversity and structure, and in mating system and gen...

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Autores principales: Owusu, Sandra A., Staton, Margaret, Jennings, Tara N., Schlarbaum, Scott, Coggeshall, Mark V., Romero-Severson, Jeanne, Carlson, John E., Gailing, Oliver
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103117/
https://www.ncbi.nlm.nih.gov/pubmed/25202504
http://dx.doi.org/10.3732/apps.1300050
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author Owusu, Sandra A.
Staton, Margaret
Jennings, Tara N.
Schlarbaum, Scott
Coggeshall, Mark V.
Romero-Severson, Jeanne
Carlson, John E.
Gailing, Oliver
author_facet Owusu, Sandra A.
Staton, Margaret
Jennings, Tara N.
Schlarbaum, Scott
Coggeshall, Mark V.
Romero-Severson, Jeanne
Carlson, John E.
Gailing, Oliver
author_sort Owusu, Sandra A.
collection PubMed
description • Premise of the study: Fourteen genomic microsatellite markers were developed and characterized in honey locust, Gleditsia triacanthos, using Illumina sequencing. Due to their high variability, these markers can be applied in analyses of genetic diversity and structure, and in mating system and gene flow studies. • Methods and Results: Thirty-six individuals from across the species range were included in a genetic diversity analysis and yielded three to 20 alleles per locus. Observed heterozygosity and expected heterozygosity ranged from 0.214 to 0.944 and from 0.400 to 0.934, respectively, with minimal occurrence of null alleles. Regular segregation of maternal alleles was observed at seven loci and moderate segregation distortion at four of 11 loci that were heterozygous in the seed parent. • Conclusions: Honey locust is an important agroforestry tree capable of very fast growth and tolerance of poor site conditions. This is the first report of genomic microsatellites for this species.
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spelling pubmed-41031172014-09-08 Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1) Owusu, Sandra A. Staton, Margaret Jennings, Tara N. Schlarbaum, Scott Coggeshall, Mark V. Romero-Severson, Jeanne Carlson, John E. Gailing, Oliver Appl Plant Sci Primer Note • Premise of the study: Fourteen genomic microsatellite markers were developed and characterized in honey locust, Gleditsia triacanthos, using Illumina sequencing. Due to their high variability, these markers can be applied in analyses of genetic diversity and structure, and in mating system and gene flow studies. • Methods and Results: Thirty-six individuals from across the species range were included in a genetic diversity analysis and yielded three to 20 alleles per locus. Observed heterozygosity and expected heterozygosity ranged from 0.214 to 0.944 and from 0.400 to 0.934, respectively, with minimal occurrence of null alleles. Regular segregation of maternal alleles was observed at seven loci and moderate segregation distortion at four of 11 loci that were heterozygous in the seed parent. • Conclusions: Honey locust is an important agroforestry tree capable of very fast growth and tolerance of poor site conditions. This is the first report of genomic microsatellites for this species. Botanical Society of America 2013-11-28 /pmc/articles/PMC4103117/ /pubmed/25202504 http://dx.doi.org/10.3732/apps.1300050 Text en © 2013 Owusu et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Owusu, Sandra A.
Staton, Margaret
Jennings, Tara N.
Schlarbaum, Scott
Coggeshall, Mark V.
Romero-Severson, Jeanne
Carlson, John E.
Gailing, Oliver
Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1)
title Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1)
title_full Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1)
title_fullStr Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1)
title_full_unstemmed Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1)
title_short Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing(1)
title_sort development of genomic microsatellites in gleditsia triacanthos (fabaceae) using illumina sequencing(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103117/
https://www.ncbi.nlm.nih.gov/pubmed/25202504
http://dx.doi.org/10.3732/apps.1300050
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