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Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)
• Premise of the study: We developed and characterized five polymorphic microsatellite loci from an AC-enriched genomic library of a rare tree, Tapiscia sinensis, and six compound microsatellite primers using a dual-suppression-PCR–based approach, to investigate geographical genetic structure. • Met...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103118/ https://www.ncbi.nlm.nih.gov/pubmed/25202505 http://dx.doi.org/10.3732/apps.1300051 |
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author | Zhang, Pengfei Wang, Zhiguang Liu, Yaling Tian, Hua Yao, Xiaohong Zhang, Jinju |
author_facet | Zhang, Pengfei Wang, Zhiguang Liu, Yaling Tian, Hua Yao, Xiaohong Zhang, Jinju |
author_sort | Zhang, Pengfei |
collection | PubMed |
description | • Premise of the study: We developed and characterized five polymorphic microsatellite loci from an AC-enriched genomic library of a rare tree, Tapiscia sinensis, and six compound microsatellite primers using a dual-suppression-PCR–based approach, to investigate geographical genetic structure. • Methods and Results: The polymorphism of these loci was assessed in 102 samples collected from three populations. The number of alleles per locus ranged from one to nine. Expected heterozygosity per locus ranged from 0.000 to 0.709 and observed heterozygosity ranged from 0.000 to 0.750. Five loci deviated from Hardy–Weinberg equilibrium after Bonferroni correction. • Conclusions: This set of microsatellites may be useful for investigating broad-scale genetic variation in the extant populations of the endangered tree species T. sinensis. |
format | Online Article Text |
id | pubmed-4103118 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41031182014-09-08 Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) Zhang, Pengfei Wang, Zhiguang Liu, Yaling Tian, Hua Yao, Xiaohong Zhang, Jinju Appl Plant Sci Primer Note • Premise of the study: We developed and characterized five polymorphic microsatellite loci from an AC-enriched genomic library of a rare tree, Tapiscia sinensis, and six compound microsatellite primers using a dual-suppression-PCR–based approach, to investigate geographical genetic structure. • Methods and Results: The polymorphism of these loci was assessed in 102 samples collected from three populations. The number of alleles per locus ranged from one to nine. Expected heterozygosity per locus ranged from 0.000 to 0.709 and observed heterozygosity ranged from 0.000 to 0.750. Five loci deviated from Hardy–Weinberg equilibrium after Bonferroni correction. • Conclusions: This set of microsatellites may be useful for investigating broad-scale genetic variation in the extant populations of the endangered tree species T. sinensis. Botanical Society of America 2013-12-09 /pmc/articles/PMC4103118/ /pubmed/25202505 http://dx.doi.org/10.3732/apps.1300051 Text en © 2013 Zhang et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Zhang, Pengfei Wang, Zhiguang Liu, Yaling Tian, Hua Yao, Xiaohong Zhang, Jinju Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) |
title | Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) |
title_full | Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) |
title_fullStr | Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) |
title_full_unstemmed | Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) |
title_short | Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) |
title_sort | development and characterization of 11 polymorphic microsatellite markers in tapiscia sinensis (staphyleaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103118/ https://www.ncbi.nlm.nih.gov/pubmed/25202505 http://dx.doi.org/10.3732/apps.1300051 |
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