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Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)

• Premise of the study: We developed and characterized five polymorphic microsatellite loci from an AC-enriched genomic library of a rare tree, Tapiscia sinensis, and six compound microsatellite primers using a dual-suppression-PCR–based approach, to investigate geographical genetic structure. • Met...

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Detalles Bibliográficos
Autores principales: Zhang, Pengfei, Wang, Zhiguang, Liu, Yaling, Tian, Hua, Yao, Xiaohong, Zhang, Jinju
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103118/
https://www.ncbi.nlm.nih.gov/pubmed/25202505
http://dx.doi.org/10.3732/apps.1300051
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author Zhang, Pengfei
Wang, Zhiguang
Liu, Yaling
Tian, Hua
Yao, Xiaohong
Zhang, Jinju
author_facet Zhang, Pengfei
Wang, Zhiguang
Liu, Yaling
Tian, Hua
Yao, Xiaohong
Zhang, Jinju
author_sort Zhang, Pengfei
collection PubMed
description • Premise of the study: We developed and characterized five polymorphic microsatellite loci from an AC-enriched genomic library of a rare tree, Tapiscia sinensis, and six compound microsatellite primers using a dual-suppression-PCR–based approach, to investigate geographical genetic structure. • Methods and Results: The polymorphism of these loci was assessed in 102 samples collected from three populations. The number of alleles per locus ranged from one to nine. Expected heterozygosity per locus ranged from 0.000 to 0.709 and observed heterozygosity ranged from 0.000 to 0.750. Five loci deviated from Hardy–Weinberg equilibrium after Bonferroni correction. • Conclusions: This set of microsatellites may be useful for investigating broad-scale genetic variation in the extant populations of the endangered tree species T. sinensis.
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spelling pubmed-41031182014-09-08 Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1) Zhang, Pengfei Wang, Zhiguang Liu, Yaling Tian, Hua Yao, Xiaohong Zhang, Jinju Appl Plant Sci Primer Note • Premise of the study: We developed and characterized five polymorphic microsatellite loci from an AC-enriched genomic library of a rare tree, Tapiscia sinensis, and six compound microsatellite primers using a dual-suppression-PCR–based approach, to investigate geographical genetic structure. • Methods and Results: The polymorphism of these loci was assessed in 102 samples collected from three populations. The number of alleles per locus ranged from one to nine. Expected heterozygosity per locus ranged from 0.000 to 0.709 and observed heterozygosity ranged from 0.000 to 0.750. Five loci deviated from Hardy–Weinberg equilibrium after Bonferroni correction. • Conclusions: This set of microsatellites may be useful for investigating broad-scale genetic variation in the extant populations of the endangered tree species T. sinensis. Botanical Society of America 2013-12-09 /pmc/articles/PMC4103118/ /pubmed/25202505 http://dx.doi.org/10.3732/apps.1300051 Text en © 2013 Zhang et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Zhang, Pengfei
Wang, Zhiguang
Liu, Yaling
Tian, Hua
Yao, Xiaohong
Zhang, Jinju
Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)
title Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)
title_full Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)
title_fullStr Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)
title_full_unstemmed Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)
title_short Development and characterization of 11 polymorphic microsatellite markers in Tapiscia sinensis (Staphyleaceae)(1)
title_sort development and characterization of 11 polymorphic microsatellite markers in tapiscia sinensis (staphyleaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103118/
https://www.ncbi.nlm.nih.gov/pubmed/25202505
http://dx.doi.org/10.3732/apps.1300051
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