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Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)

• Premise of the study: We developed microsatellite markers in the legume Lens culinaris from publicly available databases to enrich the limited marker resource available for the crop. • Methods and Results: Eighty-two primer sets were identified using expressed sequence sets of L. culinaris availab...

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Detalles Bibliográficos
Autores principales: Jain, Neelu, Dikshit, H. K., Singh, D., Singh, Akanksha, Kumar, Harish
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103130/
https://www.ncbi.nlm.nih.gov/pubmed/25202567
http://dx.doi.org/10.3732/apps.1200539
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author Jain, Neelu
Dikshit, H. K.
Singh, D.
Singh, Akanksha
Kumar, Harish
author_facet Jain, Neelu
Dikshit, H. K.
Singh, D.
Singh, Akanksha
Kumar, Harish
author_sort Jain, Neelu
collection PubMed
description • Premise of the study: We developed microsatellite markers in the legume Lens culinaris from publicly available databases to enrich the limited marker resource available for the crop. • Methods and Results: Eighty-two primer sets were identified using expressed sequence sets of L. culinaris available in the National Center for Biotechnology Information (NCBI) database and were characterized in six species of Lens. Among them, 20 simple sequence repeat (SSR) primers produced no amplification product, 43 produced monomorphic products, and 19 were polymorphic. The primers amplified mono-, di-, tri-, tetra-, penta-, and hexanucleotide repeats with one to four alleles. These SSR loci successfully amplified in five related wild species, with a total of 61 primer pairs in L. nigricans and L. odemensis (98.39%), 59 in L. tomentosus (95.1%), and 60 in L. ervoides and L. orientalis (96.7%), respectively. • Conclusions: The microsatellite markers discovered in this study will be useful in genetic mapping, marker-assisted breeding, and characterization of germplasm.
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spelling pubmed-41031302014-09-08 Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) Jain, Neelu Dikshit, H. K. Singh, D. Singh, Akanksha Kumar, Harish Appl Plant Sci Primer Note • Premise of the study: We developed microsatellite markers in the legume Lens culinaris from publicly available databases to enrich the limited marker resource available for the crop. • Methods and Results: Eighty-two primer sets were identified using expressed sequence sets of L. culinaris available in the National Center for Biotechnology Information (NCBI) database and were characterized in six species of Lens. Among them, 20 simple sequence repeat (SSR) primers produced no amplification product, 43 produced monomorphic products, and 19 were polymorphic. The primers amplified mono-, di-, tri-, tetra-, penta-, and hexanucleotide repeats with one to four alleles. These SSR loci successfully amplified in five related wild species, with a total of 61 primer pairs in L. nigricans and L. odemensis (98.39%), 59 in L. tomentosus (95.1%), and 60 in L. ervoides and L. orientalis (96.7%), respectively. • Conclusions: The microsatellite markers discovered in this study will be useful in genetic mapping, marker-assisted breeding, and characterization of germplasm. Botanical Society of America 2013-07-21 /pmc/articles/PMC4103130/ /pubmed/25202567 http://dx.doi.org/10.3732/apps.1200539 Text en © 2013 Botanical Society of America
spellingShingle Primer Note
Jain, Neelu
Dikshit, H. K.
Singh, D.
Singh, Akanksha
Kumar, Harish
Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)
title Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)
title_full Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)
title_fullStr Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)
title_full_unstemmed Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)
title_short Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)
title_sort discovery of est-derived microsatellite primers in the legume lens culinaris (fabaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103130/
https://www.ncbi.nlm.nih.gov/pubmed/25202567
http://dx.doi.org/10.3732/apps.1200539
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