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Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1)
• Premise of the study: We developed microsatellite markers in the legume Lens culinaris from publicly available databases to enrich the limited marker resource available for the crop. • Methods and Results: Eighty-two primer sets were identified using expressed sequence sets of L. culinaris availab...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103130/ https://www.ncbi.nlm.nih.gov/pubmed/25202567 http://dx.doi.org/10.3732/apps.1200539 |
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author | Jain, Neelu Dikshit, H. K. Singh, D. Singh, Akanksha Kumar, Harish |
author_facet | Jain, Neelu Dikshit, H. K. Singh, D. Singh, Akanksha Kumar, Harish |
author_sort | Jain, Neelu |
collection | PubMed |
description | • Premise of the study: We developed microsatellite markers in the legume Lens culinaris from publicly available databases to enrich the limited marker resource available for the crop. • Methods and Results: Eighty-two primer sets were identified using expressed sequence sets of L. culinaris available in the National Center for Biotechnology Information (NCBI) database and were characterized in six species of Lens. Among them, 20 simple sequence repeat (SSR) primers produced no amplification product, 43 produced monomorphic products, and 19 were polymorphic. The primers amplified mono-, di-, tri-, tetra-, penta-, and hexanucleotide repeats with one to four alleles. These SSR loci successfully amplified in five related wild species, with a total of 61 primer pairs in L. nigricans and L. odemensis (98.39%), 59 in L. tomentosus (95.1%), and 60 in L. ervoides and L. orientalis (96.7%), respectively. • Conclusions: The microsatellite markers discovered in this study will be useful in genetic mapping, marker-assisted breeding, and characterization of germplasm. |
format | Online Article Text |
id | pubmed-4103130 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41031302014-09-08 Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) Jain, Neelu Dikshit, H. K. Singh, D. Singh, Akanksha Kumar, Harish Appl Plant Sci Primer Note • Premise of the study: We developed microsatellite markers in the legume Lens culinaris from publicly available databases to enrich the limited marker resource available for the crop. • Methods and Results: Eighty-two primer sets were identified using expressed sequence sets of L. culinaris available in the National Center for Biotechnology Information (NCBI) database and were characterized in six species of Lens. Among them, 20 simple sequence repeat (SSR) primers produced no amplification product, 43 produced monomorphic products, and 19 were polymorphic. The primers amplified mono-, di-, tri-, tetra-, penta-, and hexanucleotide repeats with one to four alleles. These SSR loci successfully amplified in five related wild species, with a total of 61 primer pairs in L. nigricans and L. odemensis (98.39%), 59 in L. tomentosus (95.1%), and 60 in L. ervoides and L. orientalis (96.7%), respectively. • Conclusions: The microsatellite markers discovered in this study will be useful in genetic mapping, marker-assisted breeding, and characterization of germplasm. Botanical Society of America 2013-07-21 /pmc/articles/PMC4103130/ /pubmed/25202567 http://dx.doi.org/10.3732/apps.1200539 Text en © 2013 Botanical Society of America |
spellingShingle | Primer Note Jain, Neelu Dikshit, H. K. Singh, D. Singh, Akanksha Kumar, Harish Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) |
title | Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) |
title_full | Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) |
title_fullStr | Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) |
title_full_unstemmed | Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) |
title_short | Discovery of EST-derived microsatellite primers in the legume Lens culinaris (Fabaceae)(1) |
title_sort | discovery of est-derived microsatellite primers in the legume lens culinaris (fabaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103130/ https://www.ncbi.nlm.nih.gov/pubmed/25202567 http://dx.doi.org/10.3732/apps.1200539 |
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